ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_40137_15

Organism: 2019_SCN_bioreactor_200211_biofilm_Singulisphaera_acidiphila_69_8

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: 11507..12619

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway, VirD4 component n=2 Tax=Singulisphaera acidiphila RepID=L0DQH2_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 38.6
  • Coverage: 337.0
  • Bit_score: 221
  • Evalue 1.30e-54
type IV secretory pathway, VirD4 component similarity KEGG
DB: KEGG
  • Identity: 38.6
  • Coverage: 337.0
  • Bit_score: 221
  • Evalue 3.70e-55
Type IV secretory pathway, VirD4 component {ECO:0000313|EMBL:AGA31694.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 38.6
  • Coverage: 337.0
  • Bit_score: 221
  • Evalue 1.80e-54

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Singulisphaera acidiphila → Singulisphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 1113
ATGCGGAAGTCGCCCGGCTACCAGGGCGTTCTGGAGTATTACGGCGGCCAGCTCGAATTCCTGGTGGACCGGGAGAAAGGCTCGGTGCTTTCAACCGTCCACCGACAGTTGGCGTGGATTCATTCGCCGGCGGTGGCGCGGGTGCTATCGCGTTCGACCTTCGATCCTTGCGAGCTGTGGGGCGGCAAGCTCGACATCTACATCATCATTCCGCACGACCGGCTGACGACGATGGCCGGGCTGCTGCGGCTGATCGTCTCCACTATCATCGGCCGCCTCGCCCGCAACGGCGACGAACGACATAAAGTATTGTTCATGCTTGATGAGATCGGCCATTGCGGCCGCATTCCGATGGTCGAGCGCGCCATCGGCCTCTGGCGGAAGTCGGGCCTTCGTATCTGGCTATTTGTACAGAGTTTAAGCCAGCTCAAGACCTGCTTCGGCGACGGCGCGGACAAGGTGGCGGACAATCTGGGCACCTCGCTCTATTTCGGCATCACCAGCATGGACACAGCCGACACACTGAGCAAGCGGTGCGGCGACGCCACGCAGGTGATCCAGACGATCAACCACACCCGGTCCCGCACGCGGCCGTCCGGCTTCGGCCCGCAGGCCCAGCCGGGCAGCTATTCCGACAGCACCAGCCTGTCGCTGAGTGAGAACGCCCGCAAGCTTTTTCACCCGGACGAAATCCTGGTCATGCCCCGCAACATGGGGTTGCTGTTTCATAAAAACATGCGTCCCACGCTGGTGGAGATGACCCGCTACATCGACATCAAGGGCTACGGCCGCCACGGCACCGGCCGCGAGAGGCCGCCCAGCCTGATGGTGGCCACGCTGGCGGTGGCGGCCTTGTTCCTGTTTGCCTTCAGCGGTCTGTTCGTCGCCAGCCTGCCGCCCGTGCCGCCGGCGGCGTTGCGGCGGGCCGACGCAAGCGGCGTGCCCTGGGGCGATGCCCCGGCCATGCCGGAGGACGATGCCAACCTGCCCCACTGGCGGCGGGAGCTGCGTCAGCAGATCGAGTCCATGAAGCGGTGGCGGGAAGCGGCGGAAGCCGCTTCGCATCCAGCTTCGTCCGGGCAACGCCTCTGGCTATTGCCCCAGGACCGGTAA
PROTEIN sequence
Length: 371
MRKSPGYQGVLEYYGGQLEFLVDREKGSVLSTVHRQLAWIHSPAVARVLSRSTFDPCELWGGKLDIYIIIPHDRLTTMAGLLRLIVSTIIGRLARNGDERHKVLFMLDEIGHCGRIPMVERAIGLWRKSGLRIWLFVQSLSQLKTCFGDGADKVADNLGTSLYFGITSMDTADTLSKRCGDATQVIQTINHTRSRTRPSGFGPQAQPGSYSDSTSLSLSENARKLFHPDEILVMPRNMGLLFHKNMRPTLVEMTRYIDIKGYGRHGTGRERPPSLMVATLAVAALFLFAFSGLFVASLPPVPPAALRRADASGVPWGDAPAMPEDDANLPHWRRELRQQIESMKRWREAAEAASHPASSGQRLWLLPQDR*