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berkeley_reactor_200306_biofilm_scaffold_90404_25

Organism: 2019_SCN_bioreactor_200211_biofilm_Singulisphaera_acidiphila_69_8

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: comp(29146..30744)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.9
  • Coverage: 540.0
  • Bit_score: 379
  • Evalue 7.50e-102
Pseudouridine synthase n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R0I7_ISOPI similarity UNIREF
DB: UNIREF100
  • Identity: 43.9
  • Coverage: 540.0
  • Bit_score: 379
  • Evalue 5.30e-102
pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 43.9
  • Coverage: 540.0
  • Bit_score: 379
  • Evalue 1.50e-102

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Taxonomy

Isosphaera pallida → Isosphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 1599
ATGGCGTACCGCCGCCCGTCCCCCCGTAAGGGGAATTCGTCGTCGCGCCCCGGCGCGAAAAAGCCCGGAGGCCCCCCCGGCCGACGTCCGAAGCCCGGTGGCCCCCCGAACCGCCACCAGGCCGCCCGCCACGCCCAGGACCAACGCGACCGTGGTCCGGCCCCCTCACGAGGCCGGGGCGCGGGGTCCCGCCCGCCGCAAGGGAAGGACGACGGGCTCGAACGCCTTCAGAAGATCCTGGCCCACGCCGGCGTCGGCTCGCGGCGGGCCTGCGAGGAACTCATCCTCCAGGGCCGGGTCACGGTCGACAACCAGGTCGTCCGCGAACTCGGCACCCGCGTCGATCCGCGCAGCCAGCAGGTCGCGCTCGACGGCCAGAAGATCCACGCCGAACGAAACGTCTACTACGCCGTCAACAAGCCCAAAGGATACGTCTCGACCAACAGCGACCCGTCGGGCAAGCCCCTGGTCGTCGACATCCTCCCCGAGATCCCCCAGCGGGTTTACTCGGTCGGCCGGCTCGACGAGCAGAGCACCGGGCTGATGCTCCTGACCAACGACGGCGAACTCGCGAACCGGCTGGCCCACCCGCGGTTCGGCGTCGAGAAGGTCTACCGCGTCGTGGTCGCCGGCGAGCCCCCGCGCGAAGTGCTGGACCAACTCACCCAGGGGATCTGGCTCGCCGAAGGGAAAGTCCGGGCCAAGCGGGTGCGAATGGTCGGACGCAAGGGCCAGGCCAGCGTCATGGAAATGGTGCTCGCCGAGGGGAAGAATCGCGAAATCCGCCGGATGATGGCGAAGCTCGGCCACAAGGTCATGTCGCTCACCCGGATCGCGATCGGCCCGGTCGCGCTGAAAGGTCTCGCCGTGGGCGGGTATCGGCCCCTAACGGCGCAGGAAATCGACCTGCTTCGTAAGGTCGCCGCCGGCATCGCCGTACCGACCCCTCGGTACGCGGACGTGCGTCCCCGCATCCCGCGCCCTGGCGGACCGGGACGGACGACTCGGCCCCAGGGCGAAGCCCGGGCTCAAGACGAAGCCGGCCGCCGCGAAACACGCCCCCCCAGACCGCTTCAGGGCGGTGGACGTCCGCCCCGACCCGAGGGCCAGAACCGGCCCCAGGGGCCGATGCACCAGCACGAAGGTGGACGTCCACCCCGTCCTGAAGGCCAGAACCGTCCTCCGATGCCACCCCGGCCCCTCCAGGGGGGTGGCCCGCCCCGGCCCCAGGGACAAAACCGGCCCCCGATGCCTCCCCGCCCGGGCGACCAGCGCCCCGCAGGGCAGGGGCGTCCGCCTCGGCCCGTCGCCGGGGGGCGACCGCCCCAGTCCGGCTCTCACGGCCCGATGCGCGGGCGTCCCCCGCAAGGGCAGGGGACCGGCCCCCTCGGACCGCCCCCGTCGAAGCGGCCTCGTCCCGCCGTGCCTTCGCGTGACGAGGGGCCGACCCGGAAGATCATCGGCATGGAACCCGAGGCCGCGCAAGACCGACCCGGGCCGCGGCAGCGTCGCCCCGTCCCCAAGCGCGCCCCACGGGCCGCCTTGGGGGTGAAGCGCCGGCCCCAGCGTGGCGGCGGCGATAACGCCGGCAACGATTAA
PROTEIN sequence
Length: 533
MAYRRPSPRKGNSSSRPGAKKPGGPPGRRPKPGGPPNRHQAARHAQDQRDRGPAPSRGRGAGSRPPQGKDDGLERLQKILAHAGVGSRRACEELILQGRVTVDNQVVRELGTRVDPRSQQVALDGQKIHAERNVYYAVNKPKGYVSTNSDPSGKPLVVDILPEIPQRVYSVGRLDEQSTGLMLLTNDGELANRLAHPRFGVEKVYRVVVAGEPPREVLDQLTQGIWLAEGKVRAKRVRMVGRKGQASVMEMVLAEGKNREIRRMMAKLGHKVMSLTRIAIGPVALKGLAVGGYRPLTAQEIDLLRKVAAGIAVPTPRYADVRPRIPRPGGPGRTTRPQGEARAQDEAGRRETRPPRPLQGGGRPPRPEGQNRPQGPMHQHEGGRPPRPEGQNRPPMPPRPLQGGGPPRPQGQNRPPMPPRPGDQRPAGQGRPPRPVAGGRPPQSGSHGPMRGRPPQGQGTGPLGPPPSKRPRPAVPSRDEGPTRKIIGMEPEAAQDRPGPRQRRPVPKRAPRAALGVKRRPQRGGGDNAGND*