ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_156783_8

Organism: 2019_SCN_bioreactor_200211_biofilm_Singulisphaera_acidiphila_69_8

near complete RP 49 / 55 MC: 2 BSCG 48 / 51 MC: 1 ASCG 13 / 38 MC: 2
Location: comp(12073..13035)

Top 3 Functional Annotations

Value Algorithm Source
GDP-D-mannose dehydratase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D7A4_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 78.8
  • Coverage: 320.0
  • Bit_score: 511
  • Evalue 3.20e-142
GDP-D-mannose dehydratase similarity KEGG
DB: KEGG
  • Identity: 78.8
  • Coverage: 320.0
  • Bit_score: 511
  • Evalue 9.00e-143
GDP-D-mannose dehydratase {ECO:0000313|EMBL:AGA24713.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.8
  • Coverage: 320.0
  • Bit_score: 511
  • Evalue 4.50e-142

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Singulisphaera acidiphila → Singulisphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 963
ATGCGCGTGTTGGTAACCGGGGTCTCGGGGTTCGTGGGGGGGCACCTGGCCGAGCACCTGATCGGGGCGGGCGACCTCGTGGTGGGCCTTTCAGCCTCGGGCCGTTGGCCGGACGCGTTGGCCCACCTCGGGCGGCACGTCCGCGTCGAGCGGTGCAACCTGGCCGAAGTCGCCGAGGCCGACCTGGCCGACCTGATCGCCCGCAAACAGCCCGAGGTGATCTACCACCTCGCCGCGCAGGCCAACCCCCAGGCGAGCGTGGCCGACCCCCGCGGCACCTGGGCCTTGAACCTCGGCGGCGCGTTGAACCTGCTGGAGGCCGTGAAGGCCTCGGGGCTCAAGCCGCGCGTGGTACTCGTCGGCTCGGGGGTCTGTTACGGCAACCCCGCCCCGGAGCACATGCCCGTCACCGAAGACTGCCCGCTGCGCCCCAACAACCCCTACTCCGCCAGCAAGGCCGCCGCCGACCTGCTGGGCGTGCAACACTTCCTCGCGCACGGCACCGACGTCGTGATCGCCCGCCCGTTCAACCACGCCGGCCCGCGGCAGTCGTCGTCCTACGTCCTGAGCGCCCTGGCCCGACAGGTCGCCGAGGTCGAGGCGGGAAAGAAGCCCCGGGTCGAGGTCGGCAACCTCGACATCGTCCGCGACTTCACCGACGTCCGCGACGTCGTCCGCGGCTACCGGCTCCTCGCCGAGAAAGGCGCGGGGGGTGAGATCTACAACCTCGGCACCGGCCGAGGGGTGAAGATCGCCGACGCCCTGCAAACCCTCGCCGCGATGGCCGGCCGGCCGGTCGAGGTGTTCGTCGACCCCGCGCGGGTCCGTCCGGTCGACCAACCCCTCCTCGTCGCCGACCCCTCCAAGCTCCGCGCCGCGACCGGCTGGGAGCCCCGTTTCTCGATCGAACAAACGCTCGCCGACATGCTGAACGGCTGGCGCGAGTCGGTCGCCCGCTCGTGA
PROTEIN sequence
Length: 321
MRVLVTGVSGFVGGHLAEHLIGAGDLVVGLSASGRWPDALAHLGRHVRVERCNLAEVAEADLADLIARKQPEVIYHLAAQANPQASVADPRGTWALNLGGALNLLEAVKASGLKPRVVLVGSGVCYGNPAPEHMPVTEDCPLRPNNPYSASKAAADLLGVQHFLAHGTDVVIARPFNHAGPRQSSSYVLSALARQVAEVEAGKKPRVEVGNLDIVRDFTDVRDVVRGYRLLAEKGAGGEIYNLGTGRGVKIADALQTLAAMAGRPVEVFVDPARVRPVDQPLLVADPSKLRAATGWEPRFSIEQTLADMLNGWRESVARS*