ggKbase home page

ACD51_8_17 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
37.2 183.0 124 3.10e-26 atm:ANT_20740
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=24 to=180 evalue=5.9e-37 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMTigr
null null null 5.90e-37 atm:ANT_20740
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=3 to=115 evalue=1.8e-23 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 1.80e-23 atm:ANT_20740
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=13 to=96 evalue=2.4e-16) iprscan interpro
DB: Gene3D
null null null 2.40e-16 atm:ANT_20740
Sigma70_r2 (db=HMMPfam db_id=PF04542 from=30 to=96 evalue=9.0e-14 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 9.00e-14 atm:ANT_20740
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=112 to=182 evalue=1.7e-12 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: superfamily
null null null 1.70e-12 atm:ANT_20740
Sigma70_r4_2 (db=HMMPfam db_id=PF08281 from=126 to=176 evalue=3.8e-11 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
null null null 3.80e-11 atm:ANT_20740
RNA polymerase sigma-24 subunit, ECF subfamily; K03088 RNA polymerase sigma-70 factor, ECF subfamily alias=ACD51_69595.90668.11G0017,ACD51_69595.90668.11_17,ACD51_C00008G00017 id=73126 tax=ACD51 species=Stackebrandtia nassauensis genus=Stackebrandtia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria organism_group=PER organism_desc=PER similarity UNIREF
DB: UNIREF90
100.0 null 379 6.00e-103 atm:ANT_20740
Uncharacterized protein {ECO:0000313|EMBL:EKD63434.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" UNIPROT
DB: UniProtKB
100.0 189.0 379 2.00e-102 K2BMW2_9BACT