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H2-18-all-fractions_k255_2457412_3

Organism: H2-18-all-fractions_metab_conc_34

near complete RP 43 / 55 MC: 7 BSCG 46 / 51 MC: 7 ASCG 11 / 38 MC: 1
Location: 2121..2798

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2MC69_9ACTO similarity UNIREF
DB: UNIREF100
  • Identity: 45.5
  • Coverage: 222.0
  • Bit_score: 174
  • Evalue 6.50e-41
sigma-B/F/G subfamily RNA polymerase sigma-28 factor similarity KEGG
DB: KEGG
  • Identity: 43.9
  • Coverage: 221.0
  • Bit_score: 174
  • Evalue 2.40e-41
RNA polymerase, sigma 28 subunit, Sig B/F/G subfamily {ECO:0000313|EMBL:ADP78886.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.9
  • Coverage: 221.0
  • Bit_score: 174
  • Evalue 1.20e-40

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Taxonomy

Frankia sp. EuI1c → Frankia → Frankiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 678
GTGATCGTGGAGAACCTCGCGCTCGTCAAGGCGCTCGCACGAAGATTCGCGAACCGCGGCGAGCGTCTCGACGATCTCGTCCAGGTCGGCTCGATCGGCCTGATCAACGCCGCCGACCGGTATGACGGGCGGCGCGGCGTCGACTTCCGCGCGTACGCCGTGCCGACGATCGTCGGCGAGATCCAACGACATCTACGCGACCACGCCGGCGCCGTTCGGGTCCCGCGCCGCGACCAGCAGGCGCGCGGCGCAATGCGGCGCGCGTGGCGCGAGCTCGGCGAACGACTCGACCGTTCGCCGACGTGGGCCGAGCTGACCGCGTCCGGCGTGCTCGCCGACGACGATGCCGCCCGGGCGCTCGCAGCCGAGCGGGCGGCGTCGCCGGTGTCCCTCTCGGGGCTCGAGGATGCGCGGCAGCCGTCGCTCGAGGATGAGGGGCTCGCCGCAGGCGAGAACCGGGAGCTCGTACGCGCGGCATTCCGGGCATTGACGCGTCGCGAGCGCGCCGTCGTCTCGCTCGCGTATTTCGGGGACCTCAACCAGCAGGAAGTTGCCGCCAAGCTCGGCATCTCGCAGAGCCAGACGTCGCGCCTGCTCGCGACTGCGCTGACGAAGATGCGCGACGCGCTCAGCCGTGATTTCCGTTGTGAGCCCCACCGCAACGGCCTAGACTCGTGA
PROTEIN sequence
Length: 226
VIVENLALVKALARRFANRGERLDDLVQVGSIGLINAADRYDGRRGVDFRAYAVPTIVGEIQRHLRDHAGAVRVPRRDQQARGAMRRAWRELGERLDRSPTWAELTASGVLADDDAARALAAERAASPVSLSGLEDARQPSLEDEGLAAGENRELVRAAFRALTRRERAVVSLAYFGDLNQQEVAAKLGISQSQTSRLLATALTKMRDALSRDFRCEPHRNGLDS*