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H3-16-all-fractions_k255_5135516_3

Organism: H3-16-all-fractions_metab_64

near complete RP 45 / 55 MC: 6 BSCG 42 / 51 MC: 10 ASCG 9 / 38 MC: 2
Location: comp(422..3964)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.4
  • Coverage: 948.0
  • Bit_score: 1122
  • Evalue 0.0
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI00036E5DD9 similarity UNIREF
DB: UNIREF100
  • Identity: 61.1
  • Coverage: 997.0
  • Bit_score: 1196
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 43.1
  • Coverage: 1151.0
  • Bit_score: 810
  • Evalue 5.90e-232

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 3543
TTGACGACCGCGGGGAACGCTGCGAAGTTGCGGCGCTTGGCGCAAAATTTGGCAGAAACAGCGACAAGCGATTTGTTCGCTCAGATTTCGAAAACTCCCGCTGTGCAATCTCTTGCGCGGCGCGTGGGGGATGGCGGAGTGTTTTCCTGTGCCGGCATCACCGAAGCCGCCCAGCCTTTTCTCATATCGGTCCTGCGCCACTTATTTCCTCAAAAGCCGATTGTGGTTGTCACCGGCATCCTGAAAACGCAGGAAAGTTTTCACCAGGATATTGAGACGTGGAATGAGCTGAAAGGGGAGAATGGACAGGGGAGAACGGAGCAGCCAAAGACGGTGTTCTATCCGGCCTGGGAAATTCTTCCGCATGAAAACAAGCTTCCGCATGCGGATACTATTACAGACCGACTCCAGGCGTTGGCGGCGCTTTCCGGCGAGCCCAAATCTTCAGTCGTGGTTACGAGCGTGACCGCTCTGTTGCAAAAAACTTTCGCGCCGGAAGCCTTGCGCTCCCGCATGCGGAAAGTCGAGCGCGGCGAACGAATCGACCCCCTCGATTTGGTGGAATGGCTCGAGGCGCAGGGGTATGAGCCTGAAGCGCAAGTCACGCAGAAAGGGGAACTCGCATTGCGGGGCGGCATTCTCGATGTGTTTCCTCTCACAAGCCCGTGGCCGGTGCGACTGGAGTTTTTTGGCGACGAATTGGAATCGCTCCGTTATTTCGATCCCCTGACACAAATTTCGCGCGAGGAAATTACGGGCGTGATGCTTCCGCCCGCCGGTGAGCTGGCGCTGCTCCGGGCTGAATTGGAGCGCGGCATTCGTGCGGTTTCGGGCATCGAAATAAAAGAGCAGCAGGATATTTCCAGCGTGCCGAAAAGTCCGGCGATTAAGCGGCCCGAAAGCCGCGCTCCTCTGGCCACGCTGCTCGACTTTCTTCCCCGCGAAACAATTTTTGTTTTGTGCGACCCGGAATCGCTCGTTATTCGAGCTGACGAATACGCGCAGCAGATTCCCGAGAACGATCCGTTTTTTATAACATGGGAGCAATTCCGCGCAAAGGCCGTCGATCAGGGGAAAACATTTTTGGAAGTGTCAGAGGCGGACGACTCGGGAAATCAAACGGGAGGTCTTACGCTGGACCTGGCCAGCCTCGACGCTTATCGGCCCATCGCCGAACGCGCGCCGGAGCCGGCCATCGCGGACGCGCAACGCCGTGAGTTCTTCGGGCAACTTCACCGCTGGCGCCGCCAGGATTACGCGGTGCATGTCTTCTGCAACAACGACGGAGAGCGGCAGCGGTTTTTGGAAATCTGGGGCGAGATGGGATTTACTGATACGGGTCCAAAGTCTGCCGAAGATGAACAACATCGGACTTTGGACATTGCACTTTTGACGCACCTTGGCTCTCTCAACCGCGGTTTCCTTTCGGACGAAGCAAAACTGGTTGTCATCACGGACGCGGAAATTTTCGGACGTTACAAAATCCAGAGGCCGCGCCGGTTGAAATCGTCGCATGCCCTGGCCACACGTTCCGCGCTGGACATTGATTTCACTGAGCTTGAGGAGGGGGACCTTGTGGTCCATTTGCAACACGGCATCGGACGCTTTCTTGGTTTGAGATATTTGCCTGCAACCGCCGGCACCGCAAAACTTGAAACCCAAAGCTCGAAACCAGAAACCGAATGCCTGGTCATTGAATATGCTCCTACGGATTCTTCCCAGGAAGCGCCGAAGCTTTATGTGCCCGTGACCGAGTCTCATCTCGTGAGCAAATATGTGGGTGCCGGCAAAATTCGCCCGCCGTTGAATACGCTCGGCGGCACGCGCTGGCAAAAGGCGAAGGAGCACGCCGAGCGCGCGGTGCAAGACGTCGCCAGCGAGTTGCTTTCCATCCAGGCAGCGCGCGAATCGCAGGCCGGCCACGCCTTCAAGCCCGACGTTCCCTGGCAGCGGGAATTTGAGGGCGCATTTGTCTTCGAGGAAACCCCGGACCAACTTCGCGCAATCCAGGAAACCAAAGTGGACATGGAGCGGCCCAAGCCGATGGACCGGCTCATCTGCGGCGACGTCGGGTTCGGGAAGACAGAAGTGGCGATTCGCGCCGCGTTCAAGGCGGTGATGGATGGACGCCAGGTGGCGGTTCTAGTGCCCACGACCGTGTTGGCGCAGCAACACTTCAACACCTTTCGCGAACGCATGGCCGATTATCCCGTGCGCATCGAACTGCTTTCACGTTTCCGGACGCGGCGGGAACAACAGTGTGTCGTGAAAGATCTCGCAGCGGGAGCGGTGGACATCGTGATTGGCACGCATCGGCTTATCCAGAGTGACGTGATGTTCAAGGACCTCGGGTTGGTGATCATTGACGAGGAACAACGCTTTGGCGTGATGCACAAGGAAAAGTTCAAGTTGCTCCGCAAGCTGGTGGACGTGCTCACCCTCAGCGCCACGCCGATTCCGCGCACGCTTTACCTCGCGCTCACCGGCGCGCGGGACATGAGTTCGATCCAAACTCCGCCGCACGACCGGCTGCCGGTAGAAACCATTGTGACGCAGTATGACGAGCGCACGATTCGGGATGCCATCCAGCGCGAACTGAATCGCGGCGGACAGGTTTTCTTTCTGCACAATCGGGTGATGACGATTCATACCATGGAACAAAAACTTCGCACGCTCGTGCCGCAGGCGCGCATCGTCGTCGGGCACGGCCAGATGCACGCGGACGATTTGGAAGAAGTGATGACGCAATTCGTCAATGGCGAGGCAGACATCCTGCTTTCGACGACCATTATTGAGAGCGGGTTGGATATTCCGAATGCGAATACTATCATCATTGATCGCGCGGACCGGTTTGGGCTGAGCGATTTGTATCAACTGCGGGGCCGCGTGGGGCGTTACAAACATCAGGCGTACGCTTATCTCCTCCTGCCGCGACACGCGCGGCTGCTGACAGACGTGCGCAAGCGCATCAGTGCCATCAAGCAATACTCCACGCTTGGGAGCGGCTTCAAAATCGCCATGCGCGATCTGGAAATTCGCGGCGCGGGAAATCTTCTGGGCTCCGAGCAAAGCGGCCATATCACGGCAGTCGGTTTTGAACTGTATTGCCAATTGCTCAAGCAAAGCGTGGCGTCGTTGAAAGGCGAGAAGGTGAAGCCGCGAGTGGACGTGGTGGTGCGATTGGATTTTCTGGGCGACGCAGCCTCTCTGCCGGAGAATTATGCCACTGAGCCGCAGCATCGGATCGAGATTTATCGCAAAGTAGCGCAGGCCACCGATAAGGCGGCGCTGGAAACATTACAGAAGGAATTGCGCGACCGGTTCGGGCCCTTGCCGCCTTCTGTTGAACTGCTCCTGCTGCTGGCCGAACTAAAAATTCTTGCGGGTGAAAAGGCGGTGGGTGTGATTGAGGTCAAAGAAGACAAGTTGATGCTTACGCGTCAGGGTGATTTCATCACGCTCGGCGGCAAGTTCCCACGTTTGACGAAGAAGGACACAAAGGCGCGGTTGAAGGAGATTAAAAAGCTATTGTTGGCGCTTTAG
PROTEIN sequence
Length: 1181
LTTAGNAAKLRRLAQNLAETATSDLFAQISKTPAVQSLARRVGDGGVFSCAGITEAAQPFLISVLRHLFPQKPIVVVTGILKTQESFHQDIETWNELKGENGQGRTEQPKTVFYPAWEILPHENKLPHADTITDRLQALAALSGEPKSSVVVTSVTALLQKTFAPEALRSRMRKVERGERIDPLDLVEWLEAQGYEPEAQVTQKGELALRGGILDVFPLTSPWPVRLEFFGDELESLRYFDPLTQISREEITGVMLPPAGELALLRAELERGIRAVSGIEIKEQQDISSVPKSPAIKRPESRAPLATLLDFLPRETIFVLCDPESLVIRADEYAQQIPENDPFFITWEQFRAKAVDQGKTFLEVSEADDSGNQTGGLTLDLASLDAYRPIAERAPEPAIADAQRREFFGQLHRWRRQDYAVHVFCNNDGERQRFLEIWGEMGFTDTGPKSAEDEQHRTLDIALLTHLGSLNRGFLSDEAKLVVITDAEIFGRYKIQRPRRLKSSHALATRSALDIDFTELEEGDLVVHLQHGIGRFLGLRYLPATAGTAKLETQSSKPETECLVIEYAPTDSSQEAPKLYVPVTESHLVSKYVGAGKIRPPLNTLGGTRWQKAKEHAERAVQDVASELLSIQAARESQAGHAFKPDVPWQREFEGAFVFEETPDQLRAIQETKVDMERPKPMDRLICGDVGFGKTEVAIRAAFKAVMDGRQVAVLVPTTVLAQQHFNTFRERMADYPVRIELLSRFRTRREQQCVVKDLAAGAVDIVIGTHRLIQSDVMFKDLGLVIIDEEQRFGVMHKEKFKLLRKLVDVLTLSATPIPRTLYLALTGARDMSSIQTPPHDRLPVETIVTQYDERTIRDAIQRELNRGGQVFFLHNRVMTIHTMEQKLRTLVPQARIVVGHGQMHADDLEEVMTQFVNGEADILLSTTIIESGLDIPNANTIIIDRADRFGLSDLYQLRGRVGRYKHQAYAYLLLPRHARLLTDVRKRISAIKQYSTLGSGFKIAMRDLEIRGAGNLLGSEQSGHITAVGFELYCQLLKQSVASLKGEKVKPRVDVVVRLDFLGDAASLPENYATEPQHRIEIYRKVAQATDKAALETLQKELRDRFGPLPPSVELLLLLAELKILAGEKAVGVIEVKEDKLMLTRQGDFITLGGKFPRLTKKDTKARLKEIKKLLLAL*