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cn_combo_scaffold_12523_5

Organism: CN-SCN_Sphingobium_10x

partial RP 17 / 55 BSCG 15 / 51 ASCG 2 / 38 MC: 1
Location: comp(4329..5111)

Top 3 Functional Annotations

Value Algorithm Source
RND transporter n=1 Tax=Sphingobium xenophagum RepID=UPI0002FF6C20 similarity UNIREF
DB: UNIREF100
  • Identity: 99.6
  • Coverage: 260.0
  • Bit_score: 486
  • Evalue 1.50e-134
RND efflux system, outer membrane lipoprotein CmeC {ECO:0000313|EMBL:CCW16232.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium similarity UNIPROT
DB: UniProtKB
  • Identity: 95.8
  • Coverage: 260.0
  • Bit_score: 472
  • Evalue 4.20e-130
putative outer membrane protein similarity KEGG
DB: KEGG
  • Identity: 85.4
  • Coverage: 260.0
  • Bit_score: 430
  • Evalue 2.80e-118

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Taxonomy

Sphingobium japonicum → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 783
GCGGGCCTCGTCTCCTCGCTCGACGAGCAGCAGGCGCGCGCGCAACTGGCGCAGACCAGCGCGTCGATCCCGCAGATCGAAGCCAGCCTGCGCGGCAGCCTCAATCGCATCGCGGTGCTGACCGGGCAGGCGCCGGGCGCCGCCACCCGCGCGCTTGAAACGCCCGCGCCCATTCCGACCGCCGCGATCGACATCGCCACCGGCATTCCCGCCGACACGCTGCGCCAGCGACCCGACGTGCGCAGCGCCGAACGCACGCTGGCCGCCGCTACCGCGCGGATCGGCGTGGCGCAGGCGCGGCTGTATCCCTCGCTTGGCATCAACGGCAATATCGGCACCACCTCCAACGCGTTCAAAGATCTGTTCAGCCTGATCACGGGCGGCGTGTTCGCCAATGTCGCGCAGACCATCTTCGACGGCGGCCGCCTCGCCTCCCAGGTGCGGGCGCAGAAGGCAGTGACCGATGGCGCGTTCGCGGCCTATAAGCAAAGCGTACTTGGCGCGCTGGAGGATGTCGAAAATGCGATGGCGGCGCTCAGCAGCGCACGGCTGCGCAAGGCGGAGTTCACCACCGCCTATGATGCGTCGAACAACGCCGCGATCCTGGCGCGCAGCCAGTATCAGGCGGGCCTCACCGACTTCCAGACCTTGTCCAACAGCGAATCCACCCTTTTGAATGCGCGCAACAGCCTGGCTGGCGCGCAATCGGACGAAATCCTTGCCCTCGCCCAGCTCTACAATGCGCTGGGCGGCGGCTGGCAGAGCATGGAAAGCCGCCCCTGA
PROTEIN sequence
Length: 261
AGLVSSLDEQQARAQLAQTSASIPQIEASLRGSLNRIAVLTGQAPGAATRALETPAPIPTAAIDIATGIPADTLRQRPDVRSAERTLAAATARIGVAQARLYPSLGINGNIGTTSNAFKDLFSLITGGVFANVAQTIFDGGRLASQVRAQKAVTDGAFAAYKQSVLGALEDVENAMAALSSARLRKAEFTTAYDASNNAAILARSQYQAGLTDFQTLSNSESTLLNARNSLAGAQSDEILALAQLYNALGGGWQSMESRP*