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cn_combo_scaffold_11206_2

Organism: CN-SCN_Sphingobium_10x

partial RP 17 / 55 BSCG 15 / 51 ASCG 2 / 38 MC: 1
Location: 579..2618

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIG7_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 91.9
  • Coverage: 680.0
  • Bit_score: 1215
  • Evalue 0.0
rpoD; RNA polymerase sigma factor RpoD similarity KEGG
DB: KEGG
  • Identity: 91.9
  • Coverage: 680.0
  • Bit_score: 1215
  • Evalue 0.0
  • rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; S similarity UNIPROT
DB: UniProtKB
  • Identity: 91.9
  • Coverage: 680.0
  • Bit_score: 1215
  • Evalue 0.0

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Taxonomy

Sphingobium sp. SYK-6 → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2040
ATGGCGAGCAAGATCAACCAGACCGAGACGACGACGGAAGAAGGCGGCGATGCGCCCCTGCTCGATCTTAACGAAGCCTCGGTCAAAAAGCTGATCGCCCGCGCCAAGAAGCGCGGCTACATCACGGTCGACGAGCTGAACAGCGCGCTGCCGGAAGACCAGATGTCTTCCGAGCAGATCGAGGACGTGATGTCGGCGCTGAACGACATGGGCGTCAACATCGTCGAGAACGAAGAGCAGGGCGAAGACGGCGACGACAACAACAACGACAATGAAGTCGACGCCATCGACAGCAGCAGCGACGAAGACGACGGCTCGGGCAATGTCGCCGAGAAGAAGAAGGAAACGGTCGACCGGACCGACGACCCGGTGCGCATGTATCTGCGCGAGATGGGCGCCGTCGAGCTGCTCAGCCGCGAGGGCGAAATCGCGATTGCCAAGCGCATCGAGGCCGGCCGCGACACGATGATCCTGGGCCTGTGCGAGAGCCCGACAACCTTCAACGCGATCATCGAATGGTCGACCGCGCTCAACAATGGCGAGATGCAGCTGCGCGAGATTCTCGATCTCGACGCCATGCTCTCGAAGGACCCTGCCCCGGAATCGCTGTCTGAAGACGGCGGCGACGATGATGGCGAGATCAGCGAAAAGACCGCCGGCCCCAGCTTCAAGGATGAGGACGAGGTCGAGGAAGAGCCCGAGGCCGAGGACGACGAGGAGTCGATGACCGAGCGCCGCGCGCGCCGGCCGGAGGAAGAGGATGAGGAGGACAACACTCTCTCCCTCGCCGCGATGGAAGAGCTGCTGAAGCCGGCCGCGCTCGAGAAGTTCGCCAACATCACGGAGCTGTACGGCAAGTTCGGCAAGATTCAGCAGGCGCGCCTCGTCGCGCTCGGCAATGGCGTGGAGCTACCCGCCAAGGATGAAGCCAGCTACCAGAAGCTGCGCGAAGACCTGACCGCCGAGGTGGAAAGCGTCCAGTTCCATCAGCAGAAGATCGAATATCTTGTCGACCAGCTCTACGCGTTCAACCGGCGCCTGACGACGCTGGGCGGCCAGATGCTGCGCCTGGCCGAGCGTCACAAGGTCAATCGCAAGGACTTTCTCGACCAGTATGTCGGCCATGAGCTGGACGATGGCTGGATGGAGAAAGTGGCCAAGCTCGACAAGAAATGGGCGGCCTTTGCCAGCGCCGAGGCCGACGCCGTCGAGCGCATCCGCGCAGAAGTGTCTGAAATCGCTCAGGCGACCGGCACGTCCCTGCCCGAATTCCGCCGCATCGTGAACATGGTGCAGAAGGGCGAGCGCGAGGCGCGGATCGCGAAGAAGGAAATGGTCGAGGCCAATCTGCGCCTCGTGATCTCCATCGCGAAGAAATACACGAACCGCGGCCTGCAATTCCTGGACCTTATCCAAGAAGGCAATATCGGCCTCATGAAGGCGGTCGACAAGTTCGAGTATCGCCGCGGCTACAAGTTCAGCACCTACGCGACCTGGTGGATTCGTCAGGCGATCACCCGCTCGATCGCCGATCAGGCACGCACGATCCGCATCCCGGTGCACATGATCGAGACGATCAACAAGCTGGTCCGCACCAGCCGCCAGTTCCTCCACGAACAGGGCCGCGAGCCCACGCCGGAAGAGATGGCCGAGCGCCTGAGCATGCCGCTCGAAAAGGTGCGCAAGGTGATGAAGATCGCCAAGGAGCCGATCTCGCTCGAAACGCCGATCGGCGACGAGGAAGACAGCCACCTAGGCGATTTCATCGAGGACAAGAACGCGATCATCCCGGTGGATGCGGCGATTCAGGCGAACCTGAAGGAAACGGTCACGCGCGTTCTCGCCAGCCTGACACCGCGCGAGGAGCGCGTGCTGCGCATGCGCTTCGGCATTGGCATGAACACCGACCATACGCTCGAGGAAGTCGGCCAGCAATTCTCGGTGACGCGCGAGCGCATCCGCCAGATCGAGGCGAAGGCGCTGCGCAAGCTCAAGCACCCGAGCCGCAGCCGCAAGATGCGCAGCTTCCTCGATCAGTAA
PROTEIN sequence
Length: 680
MASKINQTETTTEEGGDAPLLDLNEASVKKLIARAKKRGYITVDELNSALPEDQMSSEQIEDVMSALNDMGVNIVENEEQGEDGDDNNNDNEVDAIDSSSDEDDGSGNVAEKKKETVDRTDDPVRMYLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPTTFNAIIEWSTALNNGEMQLREILDLDAMLSKDPAPESLSEDGGDDDGEISEKTAGPSFKDEDEVEEEPEAEDDEESMTERRARRPEEEDEEDNTLSLAAMEELLKPAALEKFANITELYGKFGKIQQARLVALGNGVELPAKDEASYQKLREDLTAEVESVQFHQQKIEYLVDQLYAFNRRLTTLGGQMLRLAERHKVNRKDFLDQYVGHELDDGWMEKVAKLDKKWAAFASAEADAVERIRAEVSEIAQATGTSLPEFRRIVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ*