ggKbase home page

cn_combo_scaffold_12811_6

Organism: CN-SCN_Sphingobium_10x

partial RP 17 / 55 BSCG 15 / 51 ASCG 2 / 38 MC: 1
Location: comp(4702..5244)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon similarity UNIPROT
DB: UniProtKB
  • Identity: 95.6
  • Coverage: 180.0
  • Bit_score: 360
  • Evalue 1.60e-96
ribosomal large subunit pseudouridine synthase E n=1 Tax=Sphingobium xenophagum RepID=UPI000302624C similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 180.0
  • Bit_score: 376
  • Evalue 1.50e-101
rluE; ribosomal large subunit pseudouridine synthase E similarity KEGG
DB: KEGG
  • Identity: 82.4
  • Coverage: 176.0
  • Bit_score: 312
  • Evalue 1.00e-82

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingobium japonicum → Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 543
ATGGCGCTGATATTATTCAATAAACCGTTCAATGTCCTGTGCCAGTTCACCCCCGAACCCAATGGGCCGGAGCGGCAGACGCTCAAGGATTATATCGATGTGCCGGGCGTCTATCCCGCCGGGCGGCTGGACACGGACAGCGAAGGGCTGTTGCTGCTGACCGACGATGGCCGCCTGCAGGCGCGGATCGCCGACCCCCGCTTCAAAATGCCCAAAACCTATCTGGCGCAGGTGGAGGGCGAGCCGGACGAGGCGGCGCTCGACGCGCTGCGGCGCGGGGTGACGCTGAAGGACGGGCGGACCTTGCCCGCCGAGGCCGAACGGATCGACGACCCGGCGCTATGGCCCCGCGACCCCCCGGTGCGCTTTCGCAAGACCGTGGCCGATTGCTGGATCAGCCTGACGATAAGGGAGGGCAAGAACCGGCAGGTGCGGCGCATGACGGCGGCGGTCGGGCATCCGACGCTCAGGTTGGTGCGCTGGGCGATTGGCGAATGGACGCTGGAAGGTGTGCAGCCGGGGGAATGGTGCGAGGTTGGGTGA
PROTEIN sequence
Length: 181
MALILFNKPFNVLCQFTPEPNGPERQTLKDYIDVPGVYPAGRLDTDSEGLLLLTDDGRLQARIADPRFKMPKTYLAQVEGEPDEAALDALRRGVTLKDGRTLPAEAERIDDPALWPRDPPVRFRKTVADCWISLTIREGKNRQVRRMTAAVGHPTLRLVRWAIGEWTLEGVQPGEWCEVG*