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ACD52_63_2 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
rpsD; 30S ribosomal protein S4 similarity KEGG
DB: KEGG
47.8 201.0 186 5.40e-45 tfo:BFO_1572
RIBOSOMAL_S4 (db=PatternScan db_id=PS00632 from=90 to=114 evalue=0.0 interpro_id=IPR018079 interpro_description=Ribosomal protein S4, conserved site GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843)) iprscan interpro
DB: PatternScan
null null null 0.0 tfo:BFO_1572
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=199 evalue=4.2e-81 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935)) iprscan interpro
DB: HMMTigr
null null null 4.20e-81 tfo:BFO_1572
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=199 evalue=2.5e-57) iprscan interpro
DB: superfamily
null null null 2.50e-57 tfo:BFO_1572
no description (db=Gene3D db_id=G3DSA:1.10.1050.10 from=1 to=105 evalue=3.5e-35) iprscan interpro
DB: Gene3D
null null null 3.50e-35 tfo:BFO_1572
S4 (db=HMMPfam db_id=PF01479 from=92 to=139 evalue=7.2e-22 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMPfam
null null null 7.20e-22 tfo:BFO_1572
no description (db=HMMSmart db_id=SM00363 from=92 to=154 evalue=1.1e-17 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: HMMSmart
null null null 1.10e-17 tfo:BFO_1572
Ribosomal_S4 (db=HMMPfam db_id=PF00163 from=3 to=91 evalue=8.2e-17 interpro_id=IPR001912 interpro_description=Ribosomal protein S4 GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843)) iprscan interpro
DB: HMMPfam
null null null 8.20e-17 tfo:BFO_1572
30S 40S RIBOSOMAL PROTEIN (db=HMMPanther db_id=PTHR11831 from=89 to=136 evalue=8.4e-12 interpro_id=IPR001912 interpro_description=Ribosomal protein S4 GO=Cellular Component: intracellular (GO:0005622), Molecular Function: rRNA binding (GO:0019843)) iprscan interpro
DB: HMMPanther
null null null 8.40e-12 tfo:BFO_1572
S4 (db=ProfileScan db_id=PS50889 from=92 to=157 evalue=15.846 interpro_id=IPR002942 interpro_description=RNA-binding S4 GO=Molecular Function: RNA binding (GO:0003723)) iprscan interpro
DB: ProfileScan
null null null 1.58e+01 tfo:BFO_1572
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" UNIPROT
DB: UniProtKB
100.0 199.0 396 2.90e-107 K2A3S8_9BACT
ribosomal protein S4; K02986 small subunit ribosomal protein S4 alias=ACD52_275460.3269.6G0002,ACD52_275460.3269.6_2,ACD52_C00063G00002 id=75144 tax=ACD52 species=unknown genus=unknown taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes organism_group=OP11 organism_desc=OP11 similarity UNIREF
DB: UNIREF90
100.0 null 395 8.50e-108 tfo:BFO_1572
  • SCG Annotations
  • BSCG ribosomal protein S4