ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 105.34 Longest contig: 1042.01 Kbp Bin length: 60.15 Mbp GC content: 47.43 %

Contigs count: 7169 Features count: 62345 rRNAs count: 17 tRNAs count: 977

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 17

Displaying items 101-150 of 7169 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L1_007_122G1_scaffold_6771 Species: Clostridium sp. DL-VIII (50%)	2	1069 bp	30.12	2.25	100.75
L1_007_122G1_scaffold_5958 Species: Lachnospiraceae bacterium 7_1_58FAA (66.67%)	3	1209 bp	66.42	4.34	100.74
L1_007_122G1_scaffold_6709 Species: Klebsiella pneumoniae (100%)	2	1078 bp	54.45	4.31	100.74
L1_007_122G1_scaffold_3043 Species: Klebsiella variicola (50%)	4	2299 bp	65.38	7.05	100.74
L1_007_122G1_scaffold_6636 Species: Finegoldia magna (100%)	2	1090 bp	28.90	5.23	100.73
L1_007_122G1_scaffold_5801 Species: Pseudoflavonifractor capillosus (50%)	2	1233 bp	59.61	3.53	100.73
L1_007_122G1_scaffold_5603 Species: Flavonifractor plautii (100%)	2	1272 bp	69.89	3.54	100.71
L1_007_122G1_scaffold_5568 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	2	1278 bp	63.15	4.69	100.70
L1_007_122G1_scaffold_7049 Species: Finegoldia magna (100%)	2	1031 bp	33.07	3.78	100.68
L1_007_122G1_scaffold_3603 Species: [Clostridium] methylpentosum (50%)	2	1940 bp	32.37	4.95	100.67
L1_007_122G1_scaffold_4707 Species: Clostridium celatum (50%)	2	1493 bp	27.53	4.92	100.67
L1_007_122G1_scaffold_4150 Species: Clostridium sp. CAG:265 (50%)	2	1693 bp	29.77	4.34	100.65
L1_007_122G1_scaffold_3768 Species: Klebsiella pneumoniae (50%)	2	1863 bp	57.70	6.12	100.64
L1_007_122G1_scaffold_5500 Species: Finegoldia magna (100%)	2	1291 bp	28.51	4.76	100.62
L1_007_122G1_scaffold_5502 Species: Veillonella dispar (100%)	2	1291 bp	42.29	6.51	100.62
L1_007_122G1_scaffold_5339 Species: Klebsiella pneumoniae (100%)	3	1324 bp	66.62	7.36	100.60
L1_007_122G1_scaffold_4610 Species: Clostridium perfringens (100%)	2	1527 bp	28.36	3.83	100.59
L1_007_122G1_scaffold_7066 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	2	1029 bp	61.61	3.21	100.58
L1_007_122G1_scaffold_7021 Species: [Clostridium] bolteae (50%)	2	1035 bp	30.92	4.93	100.58
L1_007_122G1_scaffold_6997 Species: [Eubacterium] nodatum (50%)	2	1038 bp	24.18	3.32	100.58
L1_007_122G1_scaffold_5048 Species: [Ruminococcus] torques (50%)	2	1393 bp	36.61	4.41	100.57
L1_007_122G1_scaffold_5888 Species: uncultured bacterium (50%)	2	1220 bp	25.66	3.81	100.57
L1_007_122G1_scaffold_5540 Species: Hungatella hathewayi (100%)	2	1283 bp	54.40	153.16	100.55
L1_007_122G1_scaffold_6265 Species: Flavonifractor plautii (50%)	2	1152 bp	54.25	3.13	100.52
L1_007_122G1_scaffold_5056 Species: Clostridium perfringens (100%)	2	1391 bp	32.64	4.31	100.50
L1_007_122G1_scaffold_6032 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	2	1194 bp	62.81	3.77	100.50
L1_007_122G1_scaffold_5016 Species: Anaerococcus prevotii (100%)	2	1403 bp	27.44	2.67	100.50
L1_007_122G1_scaffold_5984 Species: Lachnospiraceae bacterium 7_1_58FAA (100%)	2	1203 bp	65.42	4.49	100.50
L1_007_122G1_scaffold_4689 Order: Clostridiales (66.67%)	3	1499 bp	29.62	11.71	100.47
L1_007_122G1_scaffold_4671 Species: Clostridium perfringens (100%)	2	1505 bp	29.57	5.58	100.47
L1_007_122G1_scaffold_6585 Species: Clostridium perfringens (100%)	2	1099 bp	23.66	3.41	100.46
L1_007_122G1_scaffold_4483 Species: Klebsiella pneumoniae (50%)	2	1565 bp	47.41	5.27	100.45
L1_007_122G1_scaffold_4414 Species: Clostridium botulinum (66.67%)	3	1589 bp	28.82	4.63	100.44
L1_007_122G1_scaffold_3049 Species: Klebsiella variicola (100%)	3	2291 bp	62.46	6.74	100.44
L1_007_122G1_scaffold_3774 Species: Clostridium perfringens (100%)	2	1858 bp	26.75	4.52	100.43
L1_007_122G1_scaffold_6154 Species: Clostridium sp. ATCC BAA-442 (100%)	2	1174 bp	59.11	3.07	100.43
L1_007_122G1_scaffold_2483 Species: Clostridium baratii (100%)	3	2826 bp	28.17	5.10	100.43
L1_007_122G1_scaffold_4933 Species: Clostridium sp. BL8 (100%)	2	1425 bp	27.65	5.16	100.42
L1_007_122G1_scaffold_5909 Species: Megasphaera sp. NM10 (50%)	2	1216 bp	60.53	3.82	100.41
L1_007_122G1_scaffold_1761 Phylum: Firmicutes (50%)	6	4165 bp	44.68	72.42	100.41
L1_007_122G1_scaffold_5756 Species: Clostridium saccharoperbutylacetonicum (50%)	2	1240 bp	32.02	3.87	100.40
L1_007_122G1_scaffold_5526 Species: Clostridium perfringens (100%)	2	1285 bp	29.34	5.37	100.39
L1_007_122G1_scaffold_7032 Species: Clostridium sp. ATCC BAA-442 (50%)	2	1034 bp	68.47	3.77	100.39
L1_007_122G1_scaffold_5433 Species: Lachnospiraceae bacterium 7_1_58FAA (50%)	2	1306 bp	67.53	4.71	100.38
L1_007_122G1_scaffold_6908 Species: Oscillibacter sp. KLE 1745 (100%)	2	1049 bp	59.77	4.86	100.38
L1_007_122G1_scaffold_5379 Species: Clostridium perfringens (50%)	2	1315 bp	28.37	4.56	100.38
L1_007_122G1_scaffold_7751 Species: Erysipelatoclostridium ramosum (50%)	2	1324 bp	37.08	374.09	100.38
L1_007_122G1_scaffold_3765 Species: Finegoldia magna (100%)	5	1865 bp	31.26	3.70	100.37
L1_007_122G1_scaffold_3712 Species: Finegoldia magna (100%)	2	1892 bp	31.66	4.68	100.37
L1_007_122G1_scaffold_2868 Species: Ruminococcaceae bacterium 585-1 (66.67%)	3	2436 bp	59.56	336.39	100.37

Displaying items 101-150 of 7169 in total

L1_007_122G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L1_007_122G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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