ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 47.59 Longest contig: 513.27 Kbp Bin length: 98.29 Mbp GC content: 49.26 %

Contigs count: 20920 Features count: 109566 rRNAs count: 20 tRNAs count: 1633

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 17

Displaying items 20301-20350 of 20920 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L2_039_239G1_scaffold_19432 Species: Paenibacillus sp. FSL H7-0357 (50%)	2	1053 bp	49.38	3.42	100.29
L2_039_239G1_scaffold_19639 Species: Lachnospiraceae bacterium 2_1_58FAA (100%)	2	1044 bp	38.51	5.17	100.29
L2_039_239G1_scaffold_9972 Species: Lachnospiraceae bacterium 2_1_58FAA (50%)	2	1738 bp	41.25	6.73	100.29
L2_039_239G1_scaffold_19718 Species: Flavonifractor plautii (50%)	2	1041 bp	63.78	4.61	100.29
L2_039_239G1_scaffold_13621 Species: Klebsiella pneumoniae (50%)	2	1382 bp	63.24	5.21	100.29
L2_039_239G1_scaffold_19940 Species: Eggerthella lenta (100%)	2	1032 bp	66.38	4.80	100.29
L2_039_239G1_scaffold_13774 Species: Streptococcus sp. F0442 (50%)	2	1370 bp	45.99	3.94	100.29
L2_039_239G1_scaffold_10217 Species: Eggerthella sp. HGA1 (50%)	2	1705 bp	69.21	6.77	100.29
L2_039_239G1_scaffold_20363 Species: Paenibacillus lactis (50%)	2	1017 bp	71.09	4.87	100.30
L2_039_239G1_scaffold_10328 Species: Eggerthella sp. HGA1 (100%)	2	1690 bp	65.21	3.91	100.30
L2_039_239G1_scaffold_20593 Species: Bifidobacterium scardovii (100%)	2	1008 bp	70.54	5.80	100.30
L2_039_239G1_scaffold_20740 Species: Chlamydia trachomatis (50%)	2	1002 bp	30.34	2.99	100.30
L2_039_239G1_scaffold_20749 Species: Klebsiella pneumoniae (100%)	2	1002 bp	58.68	4.04	100.30
L2_039_239G1_scaffold_5727 Genus: Bifidobacterium (66.67%)	3	2632 bp	47.07	53.51	100.30
L2_039_239G1_scaffold_4373 Species: Collinsella sp. 4_8_47FAA (50%)	6	4271 bp	64.04	136.72	100.30
L2_039_239G1_scaffold_10786 Species: Anaerostipes caccae (50%)	2	1639 bp	47.65	3.57	100.31
L2_039_239G1_scaffold_8403 Species: Veillonella sp. DORA_A_3_16_22 (50%)	2	1962 bp	48.78	4.66	100.31
L2_039_239G1_scaffold_10865 Species: Lachnospiraceae bacterium 8_1_57FAA (50%)	2	1630 bp	34.29	4.60	100.31
L2_039_239G1_scaffold_6910 Species: Clostridium sp. CAG:169 (100%)	6	2273 bp	58.56	5.54	100.31
L2_039_239G1_scaffold_14950 Species: Tyzzerella nexilis (50%)	2	1292 bp	48.76	5.69	100.31
L2_039_239G1_scaffold_7005 Species: Anaerostipes sp. CAG:276 (50%)	2	2249 bp	46.91	4.14	100.31
L2_039_239G1_scaffold_8680 Species: Erysipelatoclostridium ramosum (50%)	2	1917 bp	30.41	4.69	100.31
L2_039_239G1_scaffold_11217 Species: Klebsiella pneumoniae (100%)	3	1597 bp	63.12	5.73	100.31
L2_039_239G1_scaffold_15256 Species: Veillonella sp. ICM51a (50%)	2	1274 bp	41.68	4.95	100.31
L2_039_239G1_scaffold_2769 Order: Clostridiales (80%)	5	5078 bp	43.21	7.80	100.32
L2_039_239G1_scaffold_8822 Species: Peptoclostridium difficile (100%)	2	1896 bp	25.37	7.44	100.32
L2_039_239G1_scaffold_8987 Species: Klebsiella pneumoniae (50%)	2	1872 bp	63.19	6.33	100.32
L2_039_239G1_scaffold_9024 Species: Lachnospiraceae bacterium 9_1_43BFAA (50%)	2	1866 bp	46.36	5.79	100.32
L2_039_239G1_scaffold_11683 Species: Bifidobacterium scardovii (100%)	3	1546 bp	69.02	3.98	100.32
L2_039_239G1_scaffold_9237 Species: Streptococcus parasanguinis (100%)	3	1836 bp	47.06	3.02	100.33
L2_039_239G1_scaffold_16070 Species: Klebsiella oxytoca (100%)	2	1223 bp	55.44	3.43	100.33
L2_039_239G1_scaffold_16139 Species: Klebsiella pneumoniae (50%)	2	1220 bp	63.93	4.67	100.33
L2_039_239G1_scaffold_11982 Species: Anaerostipes caccae (50%)	2	1516 bp	50.53	4.35	100.33
L2_039_239G1_scaffold_16542 Species: Veillonella sp. ACP1 (50%)	2	1196 bp	41.47	3.89	100.33
L2_039_239G1_scaffold_12283 Species: Ruminococcus lactaris (50%)	2	1489 bp	45.74	3.83	100.34
L2_039_239G1_scaffold_12421 Species: Lachnospiraceae bacterium 2_1_58FAA (100%)	2	1477 bp	43.87	3.96	100.34
L2_039_239G1_scaffold_17040 Species: Pseudoflavonifractor capillosus (50%)	2	1169 bp	63.13	6.42	100.34
L2_039_239G1_scaffold_12669 Species: Holdemanella biformis (100%)	3	1456 bp	34.41	4.95	100.34
L2_039_239G1_scaffold_17149 Species: Holdemanella biformis (100%)	2	1163 bp	33.79	3.35	100.34
L2_039_239G1_scaffold_9923 Species: Eubacterium ramulus (100%)	3	1743 bp	37.35	4.04	100.34
L2_039_239G1_scaffold_5847 Phylum: Firmicutes (75%)	4	2586 bp	50.81	4.52	100.35
L2_039_239G1_scaffold_12937 Species: Klebsiella pneumoniae (100%)	3	1435 bp	62.58	5.02	100.35
L2_039_239G1_scaffold_12938 Species: Veillonella sp. oral taxon 158 (50%)	2	1435 bp	38.75	5.02	100.35
L2_039_239G1_scaffold_10135 Species: Roseburia hominis (100%)	2	1716 bp	51.34	3.67	100.35
L2_039_239G1_scaffold_10155 Species: Rothia mucilaginosa (100%)	2	1713 bp	48.22	3.68	100.35
L2_039_239G1_scaffold_13049 Species: Collinsella tanakaei (50%)	4	1426 bp	69.14	3.58	100.35
L2_039_239G1_scaffold_17610 Species: Holdemanella biformis (100%)	2	1139 bp	31.69	5.79	100.35
L2_039_239G1_scaffold_17775 Species: Tyzzerella nexilis (50%)	2	1130 bp	43.27	4.12	100.35
L2_039_239G1_scaffold_10320 Species: Eggerthella lenta (100%)	2	1692 bp	72.70	6.21	100.35
L2_039_239G1_scaffold_7008 Species: Eggerthella sp. HGA1 (100%)	2	2248 bp	63.43	3.20	100.36

Displaying items 20301-20350 of 20920 in total

L2_039_239G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L2_039_239G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

Terms of Service

Search Help