ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 113.49 Longest contig: 511.66 Kbp Bin length: 67.09 Mbp GC content: 48.51 %

Contigs count: 9539 Features count: 70056 rRNAs count: 10 tRNAs count: 937

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 18

Displaying items 151-200 of 9539 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L2_040_124G1_scaffold_4762 Species: Klebsiella pneumoniae (100%)	4	2372 bp	63.53	5.25	100.55
L2_040_124G1_scaffold_9514 Species: Streptococcus sp. HSISS2 (50%)	2	1095 bp	46.39	5.48	100.55
L2_040_124G1_scaffold_8263 Species: Streptococcus parasanguinis (50%)	2	1280 bp	44.06	6.21	100.55
L2_040_124G1_scaffold_9269 Species: Cronobacter malonaticus (50%)	2	1128 bp	48.05	4.79	100.53
L2_040_124G1_scaffold_3527 Species: Cronobacter malonaticus (60%)	5	3238 bp	62.04	6.72	100.52
L2_040_124G1_scaffold_7894 Species: Streptococcus salivarius (100%)	2	1349 bp	42.03	6.89	100.52
L2_040_124G1_scaffold_9021 Species: Streptococcus vestibularis (100%)	2	1164 bp	45.10	7.60	100.52
L2_040_124G1_scaffold_3110 Species: Cronobacter sakazakii (75%)	4	3689 bp	61.72	7.12	100.52
L2_040_124G1_scaffold_7626 Species: Veillonella atypica (50%)	2	1403 bp	39.84	7.80	100.50
L2_040_124G1_scaffold_8640 Species: Veillonella atypica (100%)	2	1221 bp	39.48	4.91	100.49
L2_040_124G1_scaffold_7522 Species: Cronobacter sakazakii (100%)	2	1427 bp	60.62	3.78	100.49
L2_040_124G1_scaffold_4543 Species: Streptococcus parasanguinis (100%)	2	2493 bp	43.60	5.78	100.48
L2_040_124G1_scaffold_9920 Species: Negativicoccus succinicivorans (100%)	2	1042 bp	49.23	3.89	100.48
L2_040_124G1_scaffold_9887 Species: Streptococcus salivarius (100%)	2	1045 bp	32.73	4.74	100.48
L2_040_124G1_scaffold_8142 Species: Streptococcus vestibularis (100%)	2	1302 bp	42.70	8.76	100.46
L2_040_124G1_scaffold_7091 Species: Klebsiella pneumoniae (100%)	3	1520 bp	55.59	5.92	100.46
L2_040_124G1_scaffold_6265 Species: Cronobacter sakazakii (50%)	2	1738 bp	62.49	6.47	100.46
L2_040_124G1_scaffold_1694 Species: Citrobacter freundii (80%)	10	7224 bp	56.01	16.30	100.46
L2_040_124G1_scaffold_6969 Species: Klebsiella pneumoniae (66.67%)	3	1547 bp	58.89	8.92	100.45
L2_040_124G1_scaffold_6090 Species: Streptococcus sanguinis (50%)	2	1792 bp	42.52	7.62	100.45
L2_040_124G1_scaffold_4969 Species: Cronobacter sakazakii (50%)	4	2252 bp	64.70	8.33	100.44
L2_040_124G1_scaffold_9253 Species: Cronobacter sakazakii (100%)	2	1129 bp	62.53	5.98	100.44
L2_040_124G1_scaffold_9158 Species: Cronobacter sakazakii (100%)	2	1141 bp	59.60	4.73	100.44
L2_040_124G1_scaffold_6716 Species: Escherichia coli (50%)	2	1607 bp	48.41	12.88	100.44
L2_040_124G1_scaffold_5899 Species: Citrobacter freundii (66.67%)	3	1855 bp	53.15	14.31	100.43
L2_040_124G1_scaffold_7575 Species: Cronobacter sakazakii (100%)	2	1416 bp	60.38	6.89	100.42
L2_040_124G1_scaffold_4220 Species: Klebsiella pneumoniae (66.67%)	3	2692 bp	61.00	11.76	100.41
L2_040_124G1_scaffold_6336 Genus: Cronobacter (100%)	3	1715 bp	62.68	5.51	100.41
L2_040_124G1_scaffold_5535 Species: Enterococcus faecium (100%)	3	1996 bp	42.23	6.31	100.40
L2_040_124G1_scaffold_10176 Species: Veillonella sp. ICM51a (50%)	2	1010 bp	37.82	5.35	100.40
L2_040_124G1_scaffold_10147 Species: Escherichia coli (50%)	2	1013 bp	56.86	8.14	100.40
L2_040_124G1_scaffold_4064 Species: Cronobacter sakazakii (50%)	2	2803 bp	60.58	7.06	100.39
L2_040_124G1_scaffold_6968 Species: Cronobacter malonaticus (50%)	2	1548 bp	31.59	3.97	100.39
L2_040_124G1_scaffold_9906 Species: Streptococcus salivarius (100%)	2	1043 bp	43.24	4.31	100.38
L2_040_124G1_scaffold_9916 Species: Cronobacter malonaticus (50%)	2	1043 bp	60.88	6.62	100.38
L2_040_124G1_scaffold_6886 Species: Enterococcus faecium (100%)	3	1566 bp	39.59	6.32	100.38
L2_040_124G1_scaffold_9790 Species: Streptococcus vestibularis (100%)	2	1058 bp	39.70	6.10	100.38
L2_040_124G1_scaffold_6710 Species: Negativicoccus succinicivorans (100%)	3	1608 bp	49.19	5.97	100.37
L2_040_124G1_scaffold_5826 Species: Cronobacter sakazakii (66.67%)	3	1880 bp	62.18	7.02	100.37
L2_040_124G1_scaffold_6579 Species: Clostridium perfringens (100%)	2	1638 bp	23.32	9.98	100.37
L2_040_124G1_scaffold_7802 Species: Finegoldia magna (100%)	2	1369 bp	37.55	4.16	100.37
L2_040_124G1_scaffold_5014 Species: Streptococcus parasanguinis (50%)	2	2230 bp	40.58	6.52	100.36
L2_040_124G1_scaffold_9311 Species: Cronobacter sakazakii (100%)	2	1121 bp	61.64	6.16	100.36
L2_040_124G1_scaffold_7539 Species: Streptococcus salivarius (50%)	2	1423 bp	45.96	6.43	100.35
L2_040_124G1_scaffold_4920 Species: Streptococcus vestibularis (100%)	3	2278 bp	40.61	8.82	100.35
L2_040_124G1_scaffold_6317 Species: Cronobacter sakazakii (50%)	2	1719 bp	59.22	7.07	100.35
L2_040_124G1_scaffold_9006 Species: Enterococcus faecium (100%)	2	1166 bp	34.56	6.30	100.34
L2_040_124G1_scaffold_6182 Species: Klebsiella pneumoniae (100%)	2	1764 bp	60.60	8.16	100.34
L2_040_124G1_scaffold_5379 Species: Veillonella sp. ACP1 (50%)	2	2066 bp	45.06	9.08	100.34
L2_040_124G1_scaffold_8877 Species: Enterococcus gallinarum (50%)	2	1184 bp	62.16	8.99	100.34

Displaying items 151-200 of 9539 in total

L2_040_124G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L2_040_124G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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