ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 40.49 Longest contig: 611.74 Kbp Bin length: 98.46 Mbp GC content: 47.09 %

Contigs count: 20686 Features count: 107071 rRNAs count: 22 tRNAs count: 1494

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 16

Displaying items 20101-20150 of 20686 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L2_040_365G1_scaffold_15101 Species: Subdoligranulum variabile (66.67%)	3	1278 bp	58.61	5.05	100.47
L2_040_365G1_scaffold_10234 Species: Lachnospiraceae bacterium 3-1 (50%)	2	1699 bp	52.91	3.18	100.47
L2_040_365G1_scaffold_19510 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	2	1060 bp	55.38	2.83	100.47
L2_040_365G1_scaffold_3877 Species: Hungatella hathewayi (100%)	5	3813 bp	51.74	5.27	100.47
L2_040_365G1_scaffold_8752 Order: Clostridiales (66.67%)	3	1902 bp	44.27	4.57	100.47
L2_040_365G1_scaffold_12390 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	2	1475 bp	44.41	2.85	100.48
L2_040_365G1_scaffold_8790 Species: Paenibacillus dendritiformis (66.67%)	3	1896 bp	42.35	4.19	100.48
L2_040_365G1_scaffold_15415 Species: Hungatella hathewayi (100%)	2	1260 bp	47.38	4.76	100.48
L2_040_365G1_scaffold_10521 Species: Erysipelatoclostridium ramosum (50%)	2	1666 bp	33.43	3.24	100.48
L2_040_365G1_scaffold_4435 Order: Clostridiales (100%)	4	3326 bp	54.54	5.95	100.48
L2_040_365G1_scaffold_12662 Species: Clostridium sp. CAG:590 (50%)	2	1454 bp	37.21	3.51	100.48
L2_040_365G1_scaffold_15656 Species: Faecalibacterium sp. CAG:82 (66.67%)	3	1245 bp	63.21	1.93	100.48
L2_040_365G1_scaffold_20114 Species: [Ruminococcus] gnavus (50%)	2	1036 bp	47.68	4.63	100.48
L2_040_365G1_scaffold_10668 Species: Streptococcus thermophilus CAG:236 (50%)	2	1648 bp	42.96	3.00	100.49
L2_040_365G1_scaffold_10671 Species: Streptococcus thermophilus (66.67%)	3	1648 bp	40.66	4.73	100.49
L2_040_365G1_scaffold_15817 Species: Eggerthella lenta (50%)	2	1236 bp	63.51	7.28	100.49
L2_040_365G1_scaffold_9109 Species: Gottschalkia acidurici (50%)	2	1848 bp	26.35	3.33	100.49
L2_040_365G1_scaffold_10189 Species: Eubacterium sp. 3_1_31 (100%)	2	2254 bp	41.75	28.02	100.49
L2_040_365G1_scaffold_16014 Species: Eubacterium limosum (100%)	2	1224 bp	35.54	3.43	100.49
L2_040_365G1_scaffold_20574 Species: Streptococcus thermophilus (100%)	3	1018 bp	41.16	4.57	100.49
L2_040_365G1_scaffold_20644 Species: Clostridium sp. KLE 1755 (50%)	2	1015 bp	61.67	2.96	100.49
L2_040_365G1_scaffold_39432 Order: Clostridiales (100%)	3	1215 bp	47.74	3.33	100.49
L2_040_365G1_scaffold_16176 Species: Eubacterium ramulus (66.67%)	3	1215 bp	37.45	4.57	100.49
L2_040_365G1_scaffold_20714 Species: Eggerthella lenta (100%)	2	1012 bp	68.87	2.67	100.49
L2_040_365G1_scaffold_7124 Species: Geobacillus sp. Y4.1MC1 (66.67%)	3	2221 bp	37.73	2.84	100.50
L2_040_365G1_scaffold_13182 Species: Clostridium sp. FS41 (50%)	2	1409 bp	50.04	3.41	100.50
L2_040_365G1_scaffold_20860 Species: Clostridium sp. KLE 1755 (50%)	2	1006 bp	55.57	4.03	100.50
L2_040_365G1_scaffold_16607 Species: Anaerotruncus colihominis (100%)	2	1191 bp	55.42	2.52	100.50
L2_040_365G1_scaffold_16610 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (50%)	2	1191 bp	55.84	4.53	100.50
L2_040_365G1_scaffold_16617 Species: Lachnospiraceae bacterium 2_1_58FAA (100%)	2	1191 bp	44.50	4.03	100.50
L2_040_365G1_scaffold_16620 Species: Clostridiales bacterium 1_7_47FAA (100%)	2	1191 bp	55.50	4.03	100.50
L2_040_365G1_scaffold_2752 Phylum: Firmicutes (80%)	5	5555 bp	37.95	5.48	100.50
L2_040_365G1_scaffold_4412 Order: Clostridiales (100%)	5	3352 bp	58.59	5.33	100.51
L2_040_365G1_scaffold_16783 Species: Clostridium sp. ASBs410 (100%)	2	1182 bp	50.00	4.95	100.51
L2_040_365G1_scaffold_16786 Species: [Ruminococcus] gnavus (50%)	2	1182 bp	42.98	2.79	100.51
L2_040_365G1_scaffold_16902 Species: Peptoclostridium difficile (50%)	2	1176 bp	70.58	3.57	100.51
L2_040_365G1_scaffold_9739 Order: Clostridiales (75%)	4	1761 bp	51.68	5.62	100.51
L2_040_365G1_scaffold_16954 Species: Klebsiella oxytoca (100%)	2	1173 bp	54.90	5.24	100.51
L2_040_365G1_scaffold_13802 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	2	1364 bp	52.71	4.18	100.51
L2_040_365G1_scaffold_4743 Species: Clostridium sp. CAG:448 (50%)	2	3116 bp	54.30	3.90	100.51
L2_040_365G1_scaffold_6061 Species: Firmicutes bacterium CAG:41 (100%)	4	2522 bp	39.37	4.94	100.52
L2_040_365G1_scaffold_17155 Species: Klebsiella oxytoca (100%)	2	1164 bp	52.58	5.15	100.52
L2_040_365G1_scaffold_14012 Species: [Clostridium] bolteae (50%)	2	1349 bp	46.63	3.89	100.52
L2_040_365G1_scaffold_9334 Species: Acinetobacter sp. CAG:196 (100%)	2	2310 bp	38.44	32.73	100.52
L2_040_365G1_scaffold_6160 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (50%)	2	2489 bp	53.15	4.94	100.52
L2_040_365G1_scaffold_7625 Species: Ruminococcus sp. CAG:488 (50%)	2	2101 bp	55.97	4.21	100.52
L2_040_365G1_scaffold_8725 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (50%)	2	1907 bp	54.64	3.78	100.52
L2_040_365G1_scaffold_14240 Species: Lachnospiraceae bacterium 3_1_57FAA_CT1 (100%)	2	1331 bp	51.16	4.06	100.53
L2_040_365G1_scaffold_8821 Class: Clostridia (66.67%)	3	1892 bp	43.18	3.81	100.53
L2_040_365G1_scaffold_12006 Species: Symbiobacterium thermophilum (50%)	2	1513 bp	56.77	5.16	100.53

Displaying items 20101-20150 of 20686 in total

L2_040_365G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L2_040_365G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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