ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 36.24 Longest contig: 528.62 Kbp Bin length: 149.13 Mbp GC content: 48.72 %

Contigs count: 27897 Features count: 163538 rRNAs count: 18 tRNAs count: 1934

Genome completeness

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 17

Displaying items 501-550 of 27897 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_060_256G1_scaffold_9633 Species: Clostridium nexile CAG:348 (66.67%)	3	2713 bp	42.17	61.87	100.63
L3_060_256G1_scaffold_24372 Species: Ruminococcus gnavus CAG:126 (50%)	2	1121 bp	47.81	3.21	100.62
L3_060_256G1_scaffold_20834 Species: Nosema bombycis (50%)	2	1285 bp	61.48	15.29	100.62
L3_060_256G1_scaffold_14657 Genus: Anaerostipes (66.67%)	3	1774 bp	47.75	5.83	100.62
L3_060_256G1_scaffold_24145 Species: Klebsiella pneumoniae (100%)	2	1130 bp	62.21	52.17	100.62
L3_060_256G1_scaffold_4379 Species: Butyricicoccus pullicaecorum (50%)	6	6145 bp	64.52	5.86	100.62
L3_060_256G1_scaffold_8512 Species: Klebsiella pneumoniae (50%)	6	3074 bp	66.40	54.36	100.62
L3_060_256G1_scaffold_17986 Species: Holdemania filiformis (100%)	2	1470 bp	53.06	3.88	100.61
L3_060_256G1_scaffold_14437 Species: Hungatella hathewayi (100%)	2	1801 bp	52.14	4.50	100.61
L3_060_256G1_scaffold_15861 Species: Klebsiella oxytoca (50%)	2	1646 bp	64.88	6.74	100.61
L3_060_256G1_scaffold_17808	4	1482 bp	47.10	5.36	100.61
L3_060_256G1_scaffold_20176 Species: Tyzzerella nexilis (100%)	2	1321 bp	39.44	15.78	100.61
L3_060_256G1_scaffold_14268 Species: Butyricicoccus pullicaecorum (100%)	2	1822 bp	56.37	4.69	100.60
L3_060_256G1_scaffold_23316 Species: Peptoclostridium difficile (100%)	2	1163 bp	34.82	3.87	100.60
L3_060_256G1_scaffold_17567 Species: Peptoclostridium difficile (100%)	2	1503 bp	32.73	3.19	100.60
L3_060_256G1_scaffold_17542 Order: Erysipelotrichales (66.67%)	3	1506 bp	53.39	3.19	100.60
L3_060_256G1_scaffold_6830 Species: Lelliottia amnigena (66.67%)	3	3859 bp	62.40	11.62	100.60
L3_060_256G1_scaffold_8223 Species: [Clostridium] bolteae (100%)	2	3191 bp	30.34	6.63	100.59
L3_060_256G1_scaffold_19760 Genus: Klebsiella (66.67%)	3	1348 bp	62.61	17.14	100.59
L3_060_256G1_scaffold_27403 Species: Lactococcus lactis (100%)	2	1014 bp	35.60	3.11	100.59
L3_060_256G1_scaffold_10295 Species: Clostridium sp. KLE 1755 (50%)	2	2535 bp	55.19	5.15	100.59
L3_060_256G1_scaffold_17324 Species: Klebsiella variicola (50%)	2	1521 bp	58.58	62.62	100.59
L3_060_256G1_scaffold_27388 Species: Firmicutes bacterium CAG:124 (50%)	2	1014 bp	64.69	4.29	100.59
L3_060_256G1_scaffold_22665 Species: Ruminococcus sp. CAG:724 (50%)	2	1193 bp	56.24	3.39	100.59
L3_060_256G1_scaffold_26945 Species: Klebsiella pneumoniae (50%)	2	1029 bp	57.24	4.08	100.58
L3_060_256G1_scaffold_22474 Species: Peptoclostridium difficile (50%)	2	1202 bp	50.50	3.87	100.58
L3_060_256G1_scaffold_11639 Species: [Clostridium] spiroforme (100%)	2	2234 bp	29.01	5.24	100.58
L3_060_256G1_scaffold_16925 Species: Holdemania filiformis (100%)	3	1551 bp	51.32	3.97	100.58
L3_060_256G1_scaffold_26589 Domain: Bacteria (66.67%)	3	1041 bp	60.52	3.46	100.58
L3_060_256G1_scaffold_14973 Species: Klebsiella pneumoniae (66.67%)	3	1739 bp	61.13	34.59	100.57
L3_060_256G1_scaffold_10677 Species: Haemophilus parainfluenzae (100%)	2	2437 bp	37.59	3.57	100.57
L3_060_256G1_scaffold_26394 Species: Firmicutes bacterium CAG:424 (100%)	2	1047 bp	43.84	12.18	100.57
L3_060_256G1_scaffold_22090 Species: Peptoclostridium difficile (100%)	2	1223 bp	33.61	3.80	100.57
L3_060_256G1_scaffold_14847 Species: Escherichia coli (50%)	4	1754 bp	55.70	5.22	100.57
L3_060_256G1_scaffold_21906 Species: Clostridium sp. 7_3_54FAA (50%)	2	1232 bp	46.19	5.11	100.57
L3_060_256G1_scaffold_18887 Species: Lachnospiraceae bacterium 7_1_58FAA (50%)	2	1408 bp	65.41	51.14	100.57
L3_060_256G1_scaffold_18891 Species: [Clostridium] spiroforme (50%)	2	1408 bp	26.49	4.15	100.57
L3_060_256G1_scaffold_7766 Species: Desulfotomaculum ruminis (50%)	4	3395 bp	38.23	5.83	100.56
L3_060_256G1_scaffold_25662 Species: Eubacterium limosum (50%)	2	1074 bp	46.00	2.23	100.56
L3_060_256G1_scaffold_25667 Species: Clostridiales bacterium 1_7_47FAA (100%)	2	1074 bp	50.65	2.93	100.56
L3_060_256G1_scaffold_29021 Species: Tyzzerella nexilis (66.67%)	3	1435 bp	37.91	69.72	100.56
L3_060_256G1_scaffold_18467 Species: Hungatella hathewayi (100%)	2	1435 bp	52.33	2.72	100.56
L3_060_256G1_scaffold_21408 Species: Klebsiella pneumoniae (100%)	2	1256 bp	58.44	33.32	100.56
L3_060_256G1_scaffold_13101 Genus: Clostridium (50%)	4	1978 bp	42.06	5.69	100.56
L3_060_256G1_scaffold_25248 Species: [Clostridium] innocuum (100%)	2	1089 bp	43.25	4.13	100.55
L3_060_256G1_scaffold_15954 Species: Enterococcus raffinosus (100%)	2	1638 bp	42.80	3.94	100.55
L3_060_256G1_scaffold_24974 Species: Oscillibacter sp. 1-3 (50%)	2	1098 bp	44.17	1.64	100.55
L3_060_256G1_scaffold_18043 Species: Holdemania filiformis (100%)	2	1465 bp	55.29	4.20	100.55
L3_060_256G1_scaffold_20875 Species: Klebsiella pneumoniae (66.67%)	3	1283 bp	63.91	42.56	100.55
L3_060_256G1_scaffold_20876 Species: Hungatella hathewayi (100%)	2	1283 bp	49.10	3.16	100.55

Displaying items 501-550 of 27897 in total

L3_060_256G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_060_256G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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