ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 103.36 Longest contig: 373.58 Kbp Bin length: 142.57 Mbp GC content: 49.27 %

Contigs count: 20931 Features count: 146372 rRNAs count: 19 tRNAs count: 2126

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 17 / 38 MC: 17

Displaying items 301-350 of 20931 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_063_368G1_scaffold_19035 Species: Pantoea stewartii (50%)	2	1079 bp	59.68	9.73	100.93
L3_063_368G1_scaffold_7608 Species: Erysipelotrichaceae bacterium CAG:64 (100%)	2	2390 bp	49.21	8.60	100.92
L3_063_368G1_scaffold_4671 Species: Lachnospiraceae bacterium M18-1 (60%)	5	4159 bp	40.35	4.76	100.91
L3_063_368G1_scaffold_14937 Species: Clostridiales bacterium 1_7_47FAA (100%)	2	1320 bp	56.97	3.64	100.91
L3_063_368G1_scaffold_10565 Species: Clostridiales bacterium 1_7_47FAA (100%)	3	1766 bp	52.55	3.40	100.91
L3_063_368G1_scaffold_12263	4	1552 bp	47.49	3.09	100.90
L3_063_368G1_scaffold_16360	3	1222 bp	46.56	4.91	100.90
L3_063_368G1_scaffold_12131 Species: Clostridium sp. FS41 (50%)	2	1567 bp	51.18	4.40	100.89
L3_063_368G1_scaffold_18164 Species: Eubacterium sp. CAG:248 (50%)	2	1121 bp	41.75	4.15	100.89
L3_063_368G1_scaffold_18096 Species: [Clostridium] symbiosum (50%)	2	1124 bp	40.39	4.27	100.89
L3_063_368G1_scaffold_16060 Order: Clostridiales (50%)	4	1240 bp	39.76	3.02	100.89
L3_063_368G1_scaffold_8048 Species: Clostridium sp. M62/1 (50%)	4	2263 bp	49.27	7.76	100.88
L3_063_368G1_scaffold_15928 Species: Ruminococcaceae bacterium 585-1 (50%)	2	1249 bp	57.49	4.08	100.88
L3_063_368G1_scaffold_15936 Domain: Bacteria (66.67%)	3	1249 bp	55.72	3.96	100.88
L3_063_368G1_scaffold_10998 Species: Lachnospiraceae bacterium 3_1_46FAA (50%)	2	1704 bp	35.50	5.28	100.88
L3_063_368G1_scaffold_20332 Species: Acetonema longum (50%)	2	1023 bp	54.35	3.81	100.88
L3_063_368G1_scaffold_20354 Species: Peptoclostridium difficile (100%)	2	1023 bp	31.38	3.96	100.88
L3_063_368G1_scaffold_20359 Species: Clostridium sp. CAG:58 (50%)	2	1023 bp	46.24	4.11	100.88
L3_063_368G1_scaffold_10186 Species: Clostridium nexile CAG:348 (50%)	2	1826 bp	42.99	4.35	100.88
L3_063_368G1_scaffold_14263 Species: Clostridiales bacterium 1_7_47FAA (50%)	2	1371 bp	52.08	3.83	100.88
L3_063_368G1_scaffold_10916 Phylum: Firmicutes (66.67%)	3	1716 bp	59.21	3.41	100.87
L3_063_368G1_scaffold_17591 Species: Peptoclostridium difficile (100%)	2	1151 bp	31.19	3.39	100.87
L3_063_368G1_scaffold_14101 Species: Ruminococcaceae bacterium 585-1 (50%)	2	1383 bp	62.69	3.58	100.87
L3_063_368G1_scaffold_19980 Species: Clostridium sp. FS41 (66.67%)	3	1038 bp	46.44	4.62	100.87
L3_063_368G1_scaffold_9369 Species: Haemophilus influenzae (100%)	3	1963 bp	41.11	5.20	100.87
L3_063_368G1_scaffold_19335 Species: Peptoclostridium difficile (100%)	3	1065 bp	32.39	4.79	100.85
L3_063_368G1_scaffold_6978 Species: Eggerthella sp. HGA1 (100%)	2	2612 bp	58.65	6.72	100.84
L3_063_368G1_scaffold_19152 Species: Clostridium bolteae CAG:59 (50%)	2	1074 bp	58.66	4.75	100.84
L3_063_368G1_scaffold_14991 Species: [Clostridium] citroniae (100%)	2	1315 bp	55.06	4.22	100.84
L3_063_368G1_scaffold_16746 Species: Roseburia intestinalis (100%)	2	1199 bp	44.54	4.75	100.83
L3_063_368G1_scaffold_19012 Species: Clostridium sp. FS41 (50%)	2	1080 bp	57.50	3.19	100.83
L3_063_368G1_scaffold_10329 Species: Escherichia coli (100%)	3	1806 bp	60.91	10.47	100.83
L3_063_368G1_scaffold_16641 Species: Blautia sp. CAG:52 (100%)	2	1205 bp	51.29	3.73	100.83
L3_063_368G1_scaffold_13393 Species: Coprococcus catus (50%)	2	1449 bp	34.99	5.18	100.83
L3_063_368G1_scaffold_18693 Species: Clostridiales bacterium 1_7_47FAA (100%)	3	1095 bp	55.07	3.84	100.82
L3_063_368G1_scaffold_18620 Species: Lachnospiraceae bacterium 7_1_58FAA (50%)	2	1098 bp	49.18	3.01	100.82
L3_063_368G1_scaffold_18576 Species: Hungatella hathewayi (100%)	2	1101 bp	37.33	3.27	100.82
L3_063_368G1_scaffold_16146 Species: Clostridiales bacterium 1_7_47FAA (100%)	2	1235 bp	51.58	2.91	100.81
L3_063_368G1_scaffold_18330 Species: Clostridium bartlettii CAG:1329 (50%)	2	1113 bp	31.27	4.31	100.81
L3_063_368G1_scaffold_14170 Species: Clostridiales bacterium 1_7_47FAA (100%)	2	1378 bp	52.90	3.48	100.80
L3_063_368G1_scaffold_20884 Species: Flavonifractor plautii (100%)	2	1003 bp	62.21	6.58	100.80
L3_063_368G1_scaffold_6354 Species: Escherichia coli (100%)	4	2896 bp	51.14	16.16	100.79
L3_063_368G1_scaffold_7575 Order: Clostridiales (50%)	4	2402 bp	41.51	3.18	100.79
L3_063_368G1_scaffold_17811 Species: Escherichia coli (100%)	2	1140 bp	55.61	15.79	100.79
L3_063_368G1_scaffold_4359 Species: Klebsiella pneumoniae (100%)	7	4566 bp	62.22	7.65	100.79
L3_063_368G1_scaffold_20475 Species: Streptococcus anginosus (50%)	2	1018 bp	31.73	3.54	100.79
L3_063_368G1_scaffold_20476 Species: Desulfobacter postgatei (50%)	2	1018 bp	54.32	2.95	100.79
L3_063_368G1_scaffold_15544 Species: Peptostreptococcaceae bacterium CM5 (50%)	2	1277 bp	49.88	2.82	100.78
L3_063_368G1_scaffold_15552 Species: Peptoclostridium difficile (100%)	2	1277 bp	31.71	3.76	100.78
L3_063_368G1_scaffold_13862 Species: Escherichia coli (100%)	2	1405 bp	55.80	18.90	100.78

Displaying items 301-350 of 20931 in total

L3_063_368G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_063_368G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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