ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 131.54 Longest contig: 490.66 Kbp Bin length: 74.66 Mbp GC content: 44.20 %

Contigs count: 11886 Features count: 79057 rRNAs count: 8 tRNAs count: 1226

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 16

Displaying items 151-200 of 11886 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_098_332G1_scaffold_10438 Species: Veillonella sp. HPA0037 (100%)	2	1139 bp	38.54	53.20	100.88
L3_098_332G1_scaffold_5302 Species: Escherichia coli (100%)	4	2064 bp	57.41	6.54	100.87
L3_098_332G1_scaffold_10182 Species: Klebsiella quasipneumoniae (50%)	2	1163 bp	54.86	3.87	100.86
L3_098_332G1_scaffold_11220 Species: Klebsiella sp. (100%)	2	1071 bp	61.62	3.64	100.84
L3_098_332G1_scaffold_6605 Species: Lactobacillus rhamnosus (100%)	4	1678 bp	47.02	7.15	100.83
L3_098_332G1_scaffold_7187 Order: Enterobacteriales (60%)	5	1562 bp	56.08	3.55	100.83
L3_098_332G1_scaffold_11077 Species: Kluyvera ascorbata (50%)	2	1083 bp	56.33	3.19	100.83
L3_098_332G1_scaffold_7135 Species: Prevotella bivia (100%)	2	1571 bp	36.41	3.72	100.83
L3_098_332G1_scaffold_9690 Species: Klebsiella quasipneumoniae (50%)	2	1211 bp	66.06	5.70	100.83
L3_098_332G1_scaffold_10748 Species: Peptoclostridium difficile (100%)	2	1110 bp	28.92	4.05	100.81
L3_098_332G1_scaffold_5922 Species: Veillonella dispar (50%)	2	1857 bp	40.39	3.23	100.81
L3_098_332G1_scaffold_6822 Species: Klebsiella pneumoniae (100%)	2	1634 bp	61.26	5.69	100.80
L3_098_332G1_scaffold_6688 Species: Klebsiella quasipneumoniae (66.67%)	3	1658 bp	63.39	3.62	100.78
L3_098_332G1_scaffold_10311 Species: Bifidobacterium longum (100%)	2	1152 bp	70.75	44.01	100.78
L3_098_332G1_scaffold_12198 Species: Bifidobacterium bifidum (50%)	2	1414 bp	58.35	2029.67	100.78
L3_098_332G1_scaffold_7858 Species: Klebsiella sp. (66.67%)	3	1447 bp	54.80	4.35	100.76
L3_098_332G1_scaffold_5744 Genus: Veillonella (100%)	3	1915 bp	50.08	7.36	100.73
L3_098_332G1_scaffold_3526 Species: Escherichia coli (100%)	5	3166 bp	58.18	4.55	100.73
L3_098_332G1_scaffold_6149 Species: Klebsiella quasipneumoniae (50%)	2	1790 bp	55.47	4.78	100.73
L3_098_332G1_scaffold_7434 Species: Kluyvera ascorbata (50%)	2	1519 bp	53.65	3.16	100.72
L3_098_332G1_scaffold_9390 Species: Klebsiella sp. (50%)	2	1245 bp	61.85	4.10	100.72
L3_098_332G1_scaffold_7285 Species: Veillonella parvula (50%)	2	1546 bp	41.53	4.66	100.71
L3_098_332G1_scaffold_5171 Species: Escherichia vulneris (66.67%)	3	2112 bp	59.85	5.26	100.71
L3_098_332G1_scaffold_10385 Genus: Bifidobacterium (100%)	3	1144 bp	66.35	22.55	100.70
L3_098_332G1_scaffold_4236 Genus: Citrobacter (50%)	6	2598 bp	59.70	4.27	100.69
L3_098_332G1_scaffold_12003 Species: Klebsiella quasipneumoniae (50%)	2	1013 bp	62.98	4.29	100.69
L3_098_332G1_scaffold_10192 Species: Intestinibacter bartlettii (50%)	2	1162 bp	27.54	3.61	100.69
L3_098_332G1_scaffold_11900 Species: Enterobacter sp. R4-368 (50%)	2	1019 bp	53.68	3.53	100.69
L3_098_332G1_scaffold_5279 Species: Clostridium saccharobutylicum (100%)	3	2071 bp	30.52	15.14	100.68
L3_098_332G1_scaffold_5250 Order: Selenomonadales (75%)	4	2080 bp	42.79	4.40	100.67
L3_098_332G1_scaffold_8327 Species: Klebsiella sp. (100%)	2	1377 bp	67.97	4.90	100.65
L3_098_332G1_scaffold_11121 Species: Streptococcus parasanguinis (50%)	2	1079 bp	34.01	2.92	100.65
L3_098_332G1_scaffold_10980 Species: Actinomyces sp. ICM54 (100%)	2	1091 bp	70.58	2.61	100.64
L3_098_332G1_scaffold_3259 Species: Streptococcus lutetiensis (100%)	5	3452 bp	31.29	8.30	100.64
L3_098_332G1_scaffold_19256 Species: Lactobacillus fermentum (100%)	3	1112 bp	40.38	59.89	100.63
L3_098_332G1_scaffold_9150 Species: Slackia heliotrinireducens (50%)	2	1273 bp	71.41	4.36	100.63
L3_098_332G1_scaffold_5515 Species: Bifidobacterium breve (100%)	4	3259 bp	56.92	2446.16	100.61
L3_098_332G1_scaffold_5148 Species: Peptoclostridium difficile (75%)	4	2123 bp	29.30	4.73	100.61
L3_098_332G1_scaffold_7704 Species: Shimwellia blattae (50%)	2	1473 bp	59.74	2.95	100.61
L3_098_332G1_scaffold_10183 Species: Veillonella sp. 3_1_44 (100%)	2	1163 bp	39.98	5.42	100.60
L3_098_332G1_scaffold_2438 Species: Lactobacillus rhamnosus (100%)	5	5156 bp	50.66	7.30	100.60
L3_098_332G1_scaffold_6622 Species: Klebsiella sp. (100%)	2	1673 bp	54.45	4.12	100.60
L3_098_332G1_scaffold_12067 Species: Enterococcus avium (100%)	2	1008 bp	38.39	3.27	100.59
L3_098_332G1_scaffold_4503 Species: Klebsiella pneumoniae (80%)	5	2437 bp	55.68	5.54	100.57
L3_098_332G1_scaffold_4214 Species: Veillonella sp. ICM51a (50%)	2	2616 bp	40.79	50.75	100.57
L3_098_332G1_scaffold_5223 Species: Clostridium sp. CAG:221 (50%)	2	2094 bp	29.94	19.41	100.57
L3_098_332G1_scaffold_11417 Species: Streptococcus sp. BS21 (50%)	2	1053 bp	41.12	2.85	100.57
L3_098_332G1_scaffold_2446 Species: Lactobacillus paracasei (60%)	5	5131 bp	46.56	5.82	100.57
L3_098_332G1_scaffold_6020 Species: Klebsiella pneumoniae (50%)	2	1826 bp	63.80	5.18	100.55
L3_098_332G1_scaffold_2763 Species: Veillonella parvula (66.67%)	3	4216 bp	42.93	5.48	100.55

Displaying items 151-200 of 11886 in total

L3_098_332G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_098_332G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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