ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 131.54 Longest contig: 490.66 Kbp Bin length: 74.66 Mbp GC content: 44.20 %

Contigs count: 11886 Features count: 79057 rRNAs count: 8 tRNAs count: 1226

Genome completeness

megabin RP 53 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 18 / 38 MC: 16

Displaying items 251-300 of 11886 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_098_332G1_scaffold_10138 Species: Edwardsiella tarda (75%)	4	1166 bp	49.91	2.70	100.34
L3_098_332G1_scaffold_10115 Species: Clostridium celatum (50%)	2	1169 bp	24.64	3.72	100.34
L3_098_332G1_scaffold_10046 Species: Klebsiella quasipneumoniae (100%)	2	1175 bp	64.68	3.32	100.34
L3_098_332G1_scaffold_9978 Species: Klebsiella pneumoniae (100%)	2	1181 bp	56.90	4.06	100.34
L3_098_332G1_scaffold_7546 Species: Lactobacillus paracasei (100%)	3	1501 bp	44.44	4.50	100.33
L3_098_332G1_scaffold_7477 Species: Actinomyces sp. ICM54 (100%)	2	1513 bp	68.34	2.18	100.33
L3_098_332G1_scaffold_9604 Species: Bifidobacterium breve (100%)	2	1220 bp	59.92	245.66	100.33
L3_098_332G1_scaffold_9580 Species: Citrobacter werkmanii (50%)	2	1223 bp	53.56	2.94	100.33
L3_098_332G1_scaffold_5102 Species: Veillonella dispar (50%)	2	2147 bp	39.82	5.17	100.33
L3_098_332G1_scaffold_7266 Species: Klebsiella oxytoca (50%)	2	1549 bp	58.17	31.76	100.32
L3_098_332G1_scaffold_7267 Species: Klebsiella oxytoca (50%)	2	1549 bp	59.46	33.99	100.32
L3_098_332G1_scaffold_7272 Species: Peptoclostridium difficile (100%)	2	1549 bp	21.56	4.55	100.32
L3_098_332G1_scaffold_9424 Species: Klebsiella sp. (50%)	2	1241 bp	66.64	4.11	100.32
L3_098_332G1_scaffold_5703 Species: Klebsiella sp. (100%)	2	1926 bp	68.54	4.36	100.31
L3_098_332G1_scaffold_3756 Species: Klebsiella pneumoniae (75%)	4	2958 bp	61.93	4.06	100.30
L3_098_332G1_scaffold_8773 Species: Klebsiella pneumoniae (50%)	2	1319 bp	59.97	3.98	100.30
L3_098_332G1_scaffold_6671 Species: Peptoclostridium difficile (100%)	2	1663 bp	32.17	3.97	100.30
L3_098_332G1_scaffold_12168 Species: human gut metagenome (50%)	2	1002 bp	46.91	15.87	100.30
L3_098_332G1_scaffold_12033 Species: Streptococcus sp. F0442 (50%)	2	1011 bp	39.86	3.71	100.30
L3_098_332G1_scaffold_11891 Species: Enterococcus gilvus (100%)	2	1020 bp	40.39	2.35	100.29
L3_098_332G1_scaffold_11796 Species: Peptoclostridium difficile (100%)	2	1026 bp	31.38	3.51	100.29
L3_098_332G1_scaffold_11802 Species: Klebsiella pneumoniae (100%)	2	1026 bp	57.31	6.58	100.29
L3_098_332G1_scaffold_11805 Species: Veillonella sp. 6_1_27 (50%)	2	1026 bp	43.57	4.82	100.29
L3_098_332G1_scaffold_11710 Species: Citrobacter freundii (100%)	2	1032 bp	51.55	1.74	100.29
L3_098_332G1_scaffold_11713 Species: Kosakonia sacchari (50%)	2	1032 bp	58.43	4.07	100.29
L3_098_332G1_scaffold_11553 Species: Klebsiella pneumoniae (50%)	2	1044 bp	61.88	4.89	100.29
L3_098_332G1_scaffold_11517 Species: Klebsiella quasipneumoniae (50%)	2	1047 bp	66.28	4.44	100.29
L3_098_332G1_scaffold_11474 Species: Bifidobacterium breve (100%)	2	1050 bp	64.95	3100.00	100.29
L3_098_332G1_scaffold_11423 Species: Lactobacillus fermentum (100%)	2	1053 bp	44.16	43.73	100.29
L3_098_332G1_scaffold_5158 Species: Enterobacter sp. YD4 (50%)	2	2118 bp	55.76	3.54	100.28
L3_098_332G1_scaffold_11287 Species: Escherichia coli (100%)	2	1065 bp	49.01	4.08	100.28
L3_098_332G1_scaffold_11258 Species: Enterobacter sp. R4-368 (50%)	2	1068 bp	56.46	3.93	100.28
L3_098_332G1_scaffold_7991 Species: Enterobacter sp. R4-368 (66.67%)	3	1427 bp	61.81	3.68	100.28
L3_098_332G1_scaffold_7853 Species: Klebsiella sp. (50%)	2	1448 bp	64.85	4.56	100.28
L3_098_332G1_scaffold_10970 Species: Veillonella parvula (50%)	2	1092 bp	38.83	4.67	100.28
L3_098_332G1_scaffold_10745 Species: Actinomyces sp. ICM54 (50%)	2	1110 bp	66.49	2.43	100.27
L3_098_332G1_scaffold_4248 Species: Klebsiella quasipneumoniae (50%)	2	2591 bp	60.02	5.27	100.27
L3_098_332G1_scaffold_7520 Species: Klebsiella sp. (50%)	2	1505 bp	62.92	4.39	100.27
L3_098_332G1_scaffold_7470 Species: Enterobacter sp. YD4 (50%)	2	1514 bp	61.10	4.06	100.26
L3_098_332G1_scaffold_10389 Species: Actinomyces sp. ICM54 (100%)	2	1143 bp	66.05	2.62	100.26
L3_098_332G1_scaffold_10282 Species: Actinomyces sp. ICM54 (50%)	2	1155 bp	65.54	2.73	100.26
L3_098_332G1_scaffold_10242 Species: Klebsiella pneumoniae (50%)	2	1158 bp	64.08	5.57	100.26
L3_098_332G1_scaffold_7233 Species: Klebsiella pneumoniae (50%)	2	1553 bp	62.72	5.12	100.26
L3_098_332G1_scaffold_3531 Species: Veillonella parvula (66.67%)	3	3163 bp	36.67	5.17	100.25
L3_098_332G1_scaffold_9879 Species: Bacteroides fragilis CAG:558 (100%)	2	1191 bp	26.78	4.03	100.25
L3_098_332G1_scaffold_5442 Species: Klebsiella pneumoniae (100%)	3	2017 bp	66.39	5.50	100.25
L3_098_332G1_scaffold_6893 Genus: Veillonella (100%)	3	1619 bp	40.21	4.26	100.25
L3_098_332G1_scaffold_9660 Species: Clostridium sulfidigenes (100%)	2	1215 bp	30.86	3.58	100.25
L3_098_332G1_scaffold_4423 Species: Prevotella oris (50%)	4	2481 bp	42.68	4.29	100.24
L3_098_332G1_scaffold_9283 Species: Salmonella enterica (50%)	2	1257 bp	63.25	6.21	100.24

Displaying items 251-300 of 11886 in total

L3_098_332G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_098_332G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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