ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 67.76 Longest contig: 554.34 Kbp Bin length: 104.41 Mbp GC content: 44.08 %

Contigs count: 15602 Features count: 109848 rRNAs count: 21 tRNAs count: 1870

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 15

Displaying items 201-250 of 15602 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_114_360G1_scaffold_5867 Domain: Bacteria (66.67%)	3	3142 bp	61.27	5.59	100.73
L3_114_360G1_scaffold_7008 Species: Clostridium hathewayi CAG:224 (50%)	2	2481 bp	51.07	8.83	100.73
L3_114_360G1_scaffold_7722 Species: Haemophilus parainfluenzae (100%)	5	2207 bp	38.42	53.29	100.73
L3_114_360G1_scaffold_7724 Species: Haemophilus parainfluenzae (100%)	5	2207 bp	38.33	11.55	100.73
L3_114_360G1_scaffold_5403 Species: Bifidobacterium breve (87.5%)	8	3473 bp	57.93	36.97	100.72
L3_114_360G1_scaffold_11672 Species: Haemophilus parainfluenzae (100%)	2	1391 bp	41.48	40.22	100.72
L3_114_360G1_scaffold_14253 Species: Ruminococcus gnavus CAG:126 (100%)	2	1132 bp	47.35	95.41	100.71
L3_114_360G1_scaffold_8409 Species: Clostridium sp. CAG:221 (66.67%)	3	1981 bp	32.10	6.06	100.71
L3_114_360G1_scaffold_14224 Species: Lachnospiraceae bacterium 6_1_37FAA (50%)	2	1135 bp	38.94	5.42	100.71
L3_114_360G1_scaffold_14147 Species: Escherichia coli (66.67%)	3	1141 bp	55.48	20.64	100.70
L3_114_360G1_scaffold_12571 Species: Clostridium sp. CAG:221 (50%)	2	1287 bp	34.34	3.50	100.70
L3_114_360G1_scaffold_16128 Species: Haemophilus haemolyticus (50%)	2	1001 bp	40.16	2.55	100.70
L3_114_360G1_scaffold_13912 Species: Lachnospiraceae bacterium 2_1_58FAA (100%)	2	1162 bp	44.32	91.65	100.69
L3_114_360G1_scaffold_15477 Species: Clostridium sp. CAG:221 (100%)	2	1046 bp	29.54	3.44	100.67
L3_114_360G1_scaffold_10879 Species: Peptoclostridium difficile (50%)	2	1499 bp	32.56	3.70	100.67
L3_114_360G1_scaffold_15205 Species: Escherichia coli (100%)	2	1064 bp	56.20	10.43	100.66
L3_114_360G1_scaffold_15212 Species: Escherichia coli (100%)	2	1064 bp	56.39	13.82	100.66
L3_114_360G1_scaffold_14698 Species: Haemophilus paraphrohaemolyticus (100%)	2	1100 bp	50.82	4.64	100.64
L3_114_360G1_scaffold_12855 Species: Bifidobacterium pseudocatenulatum (100%)	2	1258 bp	59.86	4.29	100.64
L3_114_360G1_scaffold_11452 Species: Hungatella hathewayi (66.67%)	3	1419 bp	47.57	5.50	100.63
L3_114_360G1_scaffold_8717 Species: [Clostridium] sordellii (50%)	2	1902 bp	28.76	17.19	100.63
L3_114_360G1_scaffold_22101 Species: [Ruminococcus] gnavus (100%)	2	1112 bp	47.21	57.33	100.63
L3_114_360G1_scaffold_12468 Species: Clostridium sp. MSTE9 (50%)	2	1297 bp	37.78	2.54	100.62
L3_114_360G1_scaffold_7905 Species: Hungatella hathewayi (100%)	3	2597 bp	52.52	208.11	100.62
L3_114_360G1_scaffold_11135 Species: Veillonella sp. ACP1 (50%)	2	1461 bp	46.20	4.72	100.62
L3_114_360G1_scaffold_14125 Species: Clostridium sp. ASF356 (50%)	2	1142 bp	30.65	4.99	100.61
L3_114_360G1_scaffold_11034 Species: Escherichia coli (100%)	3	1476 bp	57.38	28.66	100.61
L3_114_360G1_scaffold_13404 Species: Haemophilus parainfluenzae (100%)	3	1703 bp	40.28	59.81	100.59
L3_114_360G1_scaffold_6317 Species: [Ruminococcus] gnavus (83.33%)	6	3418 bp	45.47	82.59	100.59
L3_114_360G1_scaffold_11850 Species: Haemophilus paraphrohaemolyticus (50%)	2	1369 bp	28.34	4.05	100.58
L3_114_360G1_scaffold_15602 Species: Lachnospiraceae bacterium 9_1_43BFAA (100%)	2	1038 bp	34.39	4.91	100.58
L3_114_360G1_scaffold_8093 Species: Haemophilus parainfluenzae (100%)	3	2085 bp	41.15	8.78	100.58
L3_114_360G1_scaffold_15510 Species: Peptoclostridium difficile (100%)	2	1044 bp	31.90	4.31	100.57
L3_114_360G1_scaffold_10407 Species: Coprococcus sp. HPP0048 (50%)	2	1569 bp	43.59	4.59	100.57
L3_114_360G1_scaffold_15422 Species: Peptoclostridium difficile (100%)	2	1050 bp	29.14	3.43	100.57
L3_114_360G1_scaffold_6694 Species: Lachnospiraceae bacterium 6_1_37FAA (66.67%)	3	2640 bp	43.56	5.23	100.57
L3_114_360G1_scaffold_9349 Species: Lactobacillus acidophilus (100%)	3	1766 bp	31.60	3.14	100.57
L3_114_360G1_scaffold_9332 Species: Bifidobacterium breve (100%)	2	1769 bp	50.59	68.26	100.57
L3_114_360G1_scaffold_6983 Species: Escherichia coli (100%)	3	2491 bp	48.82	19.15	100.56
L3_114_360G1_scaffold_12974 Species: Streptococcus thermophilus (66.67%)	3	1247 bp	41.38	52.81	100.56
L3_114_360G1_scaffold_12977 Order: Erysipelotrichales (66.67%)	3	1247 bp	37.53	4.21	100.56
L3_114_360G1_scaffold_15012 Species: Clostridium bornimense (50%)	2	1077 bp	30.18	4.32	100.56
L3_114_360G1_scaffold_14970 Species: Haemophilus parainfluenzae (100%)	2	1080 bp	42.22	9.72	100.56
L3_114_360G1_scaffold_5686 Species: Coprobacillus sp. 8_2_54BFAA (50%)	2	3252 bp	34.41	7.15	100.55
L3_114_360G1_scaffold_14773 Species: Paenibacillus polymyxa (50%)	2	1095 bp	33.79	3.15	100.55
L3_114_360G1_scaffold_12604 Species: Haemophilus parainfluenzae (50%)	2	1283 bp	44.43	66.52	100.55
L3_114_360G1_scaffold_12613 Species: Clostridium sulfidigenes (66.67%)	3	1283 bp	31.96	5.38	100.55
L3_114_360G1_scaffold_12361 Species: Lachnospiraceae bacterium 9_1_43BFAA (50%)	2	1310 bp	46.56	5.04	100.53
L3_114_360G1_scaffold_13960 Species: Lactobacillus acidophilus (100%)	2	1158 bp	37.48	4.79	100.52
L3_114_360G1_scaffold_11986 Species: Peptoclostridium difficile (100%)	2	1352 bp	28.25	3.77	100.52

Displaying items 201-250 of 15602 in total

L3_114_360G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_114_360G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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