ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 65.56 Longest contig: 662.15 Kbp Bin length: 106.21 Mbp GC content: 45.81 %

Contigs count: 17894 Features count: 113522 rRNAs count: 27 tRNAs count: 1756

Genome completeness

megabin RP 52 / 55 MC: 52 BSCG 51 / 51 MC: 51 ASCG 16 / 38 MC: 15

Displaying items 401-450 of 17894 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
L3_131_368G1_scaffold_6135 Order: Erysipelotrichales (66.67%)	3	2808 bp	53.81	82.59	100.43
L3_131_368G1_scaffold_9200 Species: Clostridium celatum (50%)	2	1879 bp	23.79	4.23	100.43
L3_131_368G1_scaffold_15614 Species: Escherichia coli (100%)	2	1183 bp	51.14	4.06	100.42
L3_131_368G1_scaffold_12539 Species: Clostridium sp. D5 (66.67%)	3	1428 bp	44.26	4.31	100.42
L3_131_368G1_scaffold_15466 Species: [Clostridium] bolteae (100%)	2	1192 bp	45.97	7.42	100.42
L3_131_368G1_scaffold_7982 Species: [Clostridium] clostridioforme (50%)	2	2151 bp	55.18	5.58	100.42
L3_131_368G1_scaffold_10333 Order: Clostridiales (100%)	3	1697 bp	54.51	22.45	100.41
L3_131_368G1_scaffold_15158 Species: Escherichia coli (100%)	3	1213 bp	56.22	2.97	100.41
L3_131_368G1_scaffold_6582 Species: Tyzzerella nexilis (50%)	4	3666 bp	42.58	198.28	100.41
L3_131_368G1_scaffold_12050 Species: Clostridium nexile CAG:348 (100%)	2	1479 bp	41.78	10.75	100.41
L3_131_368G1_scaffold_12023	3	1482 bp	41.50	4.66	100.41
L3_131_368G1_scaffold_18901 Species: Acetobacterium woodii (50%)	2	1001 bp	59.84	4.05	100.40
L3_131_368G1_scaffold_14597 Species: Escherichia coli (100%)	2	1255 bp	53.15	3.35	100.40
L3_131_368G1_scaffold_14502 Species: Enterobacter sp. 35730 (50%)	2	1264 bp	59.02	4.63	100.40
L3_131_368G1_scaffold_14464 Species: [Clostridium] innocuum (50%)	2	1267 bp	49.01	4.38	100.40
L3_131_368G1_scaffold_18454 Species: Escherichia coli (100%)	2	1022 bp	59.00	3.52	100.39
L3_131_368G1_scaffold_14294 Species: Enterobacter sp. 35730 (50%)	2	1279 bp	48.24	4.69	100.39
L3_131_368G1_scaffold_9718 Species: Porphyromonas cangingivalis (50%)	2	1793 bp	39.99	5.19	100.39
L3_131_368G1_scaffold_11515 Species: Clostridium carboxidivorans (66.67%)	3	1539 bp	26.51	4.48	100.39
L3_131_368G1_scaffold_4012 Species: Clostridiales bacterium 1_7_47FAA (100%)	2	4638 bp	55.58	8.02	100.39
L3_131_368G1_scaffold_6640 Species: Firmicutes bacterium CAG:94 (50%)	2	2591 bp	32.88	4.81	100.39
L3_131_368G1_scaffold_18115 Species: [Clostridium] bolteae (100%)	2	1040 bp	55.87	6.49	100.38
L3_131_368G1_scaffold_14010 Species: Enterobacter sp. 35730 (100%)	2	1303 bp	57.18	4.60	100.38
L3_131_368G1_scaffold_4862 Species: Butyricicoccus pullicaecorum (100%)	5	3661 bp	52.42	6.68	100.38
L3_131_368G1_scaffold_13928 Species: Clostridium butyricum (50%)	2	1309 bp	33.31	3.90	100.38
L3_131_368G1_scaffold_17661 Species: Clostridium sp. IBUN125C (50%)	2	1064 bp	31.48	4.51	100.38
L3_131_368G1_scaffold_9293 Order: Clostridiales (66.67%)	3	1865 bp	31.58	3.54	100.37
L3_131_368G1_scaffold_11029 Species: [Ruminococcus] gnavus (50%)	2	1599 bp	45.84	3.28	100.37
L3_131_368G1_scaffold_17597 Species: Enterobacter cloacae (100%)	2	1067 bp	59.98	3.23	100.37
L3_131_368G1_scaffold_9154	5	1889 bp	64.74	3.49	100.37
L3_131_368G1_scaffold_17279 Species: [Clostridium] hylemonae (50%)	2	1085 bp	52.53	4.29	100.37
L3_131_368G1_scaffold_17203 Species: Coprococcus sp. HPP0048 (50%)	2	1088 bp	48.99	2.48	100.37
L3_131_368G1_scaffold_17209 Species: Enterobacter cloacae (50%)	2	1088 bp	63.24	3.86	100.37
L3_131_368G1_scaffold_7817 Species: Saccharomyces cerevisiae (50%)	2	2188 bp	21.85	5.35	100.37
L3_131_368G1_scaffold_10597 Species: Enterobacter cloacae (66.67%)	3	1659 bp	60.34	4.16	100.36
L3_131_368G1_scaffold_16751 Species: Dorea sp. 5-2 (100%)	2	1115 bp	34.62	5.11	100.36
L3_131_368G1_scaffold_16701 Species: Enterobacter cloacae (100%)	2	1118 bp	57.78	5.64	100.36
L3_131_368G1_scaffold_16630 Species: Escherichia coli (100%)	2	1121 bp	58.43	3.61	100.36
L3_131_368G1_scaffold_12752 Species: Clostridium butyricum (100%)	2	1408 bp	27.34	4.47	100.35
L3_131_368G1_scaffold_7577 Order: Clostridiales (75%)	4	2260 bp	49.69	8.83	100.35
L3_131_368G1_scaffold_10340 Species: Lachnoclostridium phytofermentans (50%)	2	1695 bp	47.61	3.54	100.35
L3_131_368G1_scaffold_12683 Species: Escherichia coli (66.67%)	3	1414 bp	49.08	3.50	100.35
L3_131_368G1_scaffold_5916 Species: Clostridiales bacterium 1_7_47FAA (100%)	2	2912 bp	54.57	7.11	100.34
L3_131_368G1_scaffold_6561 Species: Erysipelotrichaceae bacterium CAG:64 (75%)	4	2622 bp	35.62	4.81	100.34
L3_131_368G1_scaffold_15881 Species: Clostridium sp. D5 (100%)	2	1166 bp	44.94	4.37	100.34
L3_131_368G1_scaffold_15883 Species: Peptoclostridium difficile (50%)	2	1166 bp	51.80	4.37	100.34
L3_131_368G1_scaffold_7299 Species: Fretibacterium fastidiosum (50%)	2	2356 bp	51.87	4.33	100.34
L3_131_368G1_scaffold_15688 Species: Clostridium saccharobutylicum (50%)	2	1178 bp	31.75	3.82	100.34
L3_131_368G1_scaffold_15456 Species: Peptoclostridium difficile (50%)	2	1193 bp	49.29	4.02	100.34
L3_131_368G1_scaffold_11835 Species: Escherichia coli (100%)	2	1504 bp	55.65	3.79	100.33

Displaying items 401-450 of 17894 in total

L3_131_368G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

L3_131_368G1_public_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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