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L1_008_000G1_scaffold_404_25

Organism: dasL1_008_000G1_concoct_76_fa

near complete RP 47 / 55 MC: 1 BSCG 50 / 51 ASCG 13 / 38
Location: comp(30070..33513)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.2
  • Coverage: 1147.0
  • Bit_score: 2213
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W8X2_ATOPD similarity UNIREF
DB: UNIREF100
  • Identity: 98.0
  • Coverage: 1147.0
  • Bit_score: 2192
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 98.0
  • Coverage: 1147.0
  • Bit_score: 2192
  • Evalue 0.0

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Taxonomy

Atopobium sp. ICM42b → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3444
GTGTTTATCAATAGAGTTGCAGCTCAACTACTGAGCGCACCCGAGCTAGAGAAGCTGAAGCGAGAGCTTTCGCGTGGATCAGACGCCACGCTGTCCCTCTCGCAAAGCGCTCGTCCGCTGATGCTAGCTGCACTTTGGGCGCAAAATCCCCGCCCATGCTTGCTGGTTGTCGCGGGCGAGGACGCCGCGGACCGTACGGCGCGCTCGCTTGCAGCGTGGCTGGGAAACGACGCTGTGCTGCGCTATCCCAATCGCAAGGATCGTCCCTGGTCGGATACCACGCCAGACGACGCCCTTATTGGAGCTAGGTGCCGTGCCATCGCCAAGCTTTCCGCTGGCGAGAAGGTCATTGTAGTTGCAAGTGCTCACGCGCTGATGCGCAGAGTTCCCCCTGTTGGTTCGGGCTATTTTCTTCCTGCAACGTTTACCGTTGGCGACGACGTCCCCTTTGAGGACGTGGCTTCGCTGCTCGTCGGCATGGGATACGCGGACACCGGCGAGGTAGATGCGCCAGGCACCTTCCACATTCACGGCGATACAGTTGATATCTTCCCAGCTCAGGCTACAAGTCCTGTGCGCATTGAGTTCTTCGGAGACGAGATTGACCGTATCAGGCGCATGGTGGCGGCTACCGGACAGACTATCGGTGCCATTGATGAGGTAACCGTTGCCCCAGCTAGAGAGCTTGCGTTTACCAAAGAAACTATCCGCTGCGCAGAAGAAGCGCTCTACACACGCGCGCAAGAAAACTCTGCACTCGCTGCTGACCTGGAGCTTATTCAGCGCGGAGCTCAGGCTCCTGCACTTGAGCGCTATCTGCCTGTGCTGTACGGAGGCTCTGCCAGCCCGCTTGAGCACATCTCTTCAGAGACGCTGGTAGTTCTTGCAGAGCCACGCTCACTGTTTGACGATTGTCAGCGTGCCTTTGACGAAATCTCTGCATCCGCAGCGGCATCAAAAGTGAAACTAGATGGTCTGTATACAGATCCCAAGGCCATGGACTTTGGCTCGCAGCAGCGCTTGTCCTTCTCGTCACTTTTGCGCACGGGAGCTGTGGTAACGTCGGAGCTTTCTGTGGTACAGCCGTCCATTGCAGGCTCGGACGCAAAGCTTTTGGGTCGCGTAAGGCAGCTGGTGCAAGATCGTGATGCTGTGGTATTTGCAGTGCCCGATCGTGCGGCGCGAGAGCACCTCAAGTTGCTTTTTTCGGATGAATCCATTCCGTTTGAGGAGTCGCTGGGTACGGCGCTTGAAAACGAGCCAGACCAAAACGGAGCCTACGCGCCACTCAAGCGTGGCCGCGTCACGTTTACCGACGCACCCGTTCCTGCAGGAATCATCATCCCAACGGCCAATCTAGCAGTGCTTTCTGTCTCGGACTTGACGGCCAGAAGCGCACGCAACAAGAAACGTTCCAAACGTATTGACCCCACAACGGTGACGTTCCCGTTTAAGCCGGGCGATTACGTTGTCCACGCAACGCACGGTATTGCGCACTTTACGGCCATTGTGCGTCAAGAAGTTGCAGGTAGAGAGCGTGATTACTTCCTGCTTGAGTATGCCAATGACGATAAACTCTATGTGCCCCTGGAGCAGGTTGACCGCATTACGCGCTATGTGGGACCCGACGGCAACAATCCGCGCCTGACCAGGCTTAACACGGCAGATTGGTCGCGCGCCACTAACAAGGCAAGAAAATCTGCCAAGAAACTGGCGTTTGACCTGGTAGACCTCTACACACGCCGCGCTTCAGTGCCGGGTTATGCGTTCTCGCTGGACACTCCCGCTCAGGAGGAGATGGAATCCAGCTTCCCGTATCAGCTGACGCCAGACCAAGAAAGCGCTGTTGCAGACATTAAGCTGGACATGGAAGCGCGCAAGCCAATGGACCGTCTGCTTTGCGGAGACGTGGGCTTTGGCAAGACAGAGGTGGCGCTGAGAGCTGCATTTAAGGCATGCCAGGATGCTCGTCAGGTTATGATTTTGTGCCCAACTACCATCTTGGCTCAGCAGCACTACGAGACGTTTTTCTCGCGATTTGCTCCGTTTGATTTGAAGGTAAGCGTACTTTCGCGTTTTGTTACGCCGGCTCAGCAGAAAAAAGCGCTTGAGGGATTTGCGGATGGAACCGTAGATGTGCTGGTAGGAACTCATAGGTTGCTCTCAGCTGACGTCAATCCGCACGACTTAGGCTTAGTTATCATCGACGAAGAGCAGCGCTTTGGCGTACAGCACAAAGAGCAGCTCAAAAACATGCGCGAGCAGGTAGACGTGCTGACGCTCTCGGCAACGCCCATTCCGCGCACCATGCAGATGGCCATGAGCGGCGTGCGCGACATGAGCCTGATTCTGACACCGCCACCTGGCAGAAAGCCTGTTCAGGTTATGGTGGGTGAGTACAACCCGGATCTTGTTTCTGCAGCTATTAGAAGTGAGTTGGAGCGAGAAGGACAGGTGTACTACGTGTCCAACCGCGTGACCACTATTGATGAGGCGGTGGCTCGTGTGGAGGAAGCTGCGCCGGAAGCTCGCGTGGGCGTGGCTCACGGCCAGATGAGCGCTCGCGAGGTAGAAAACGTCATGCTTGCCTTCCAGGAGCACGAGATTGACGTTTTAGTGGCCACCACCATCATTGAGTCCGGCATTGACAACTCGCACACTAACACGCTGATTATTGAGGACTCACAGCGCTTGGGACTGGCTCAGCTGTACCAGCTCAAGGGCCGTGTTGGTCGCGGTAGGCAGCAGGCATACGCATACTTTATGTTCCCCGCGGAGTTGCCGCTGACAGAAGAGGCAACCGAGCGTCTGACTGCAATCAACGAGTTCCAGGACCTGGGCAGCGGCATGCGCATTGCCATGCGTGACCTAGAGATTAGAGGCGCCGGCTCTCTTATGGGCGCTGAGCAGCACGGAAACCTTTCCAGCGTTGGTTTTGACCTCTTTACGCAGATGCTGGGCGAGGCAGTTGCTGAGGCTCGCGGTGAGTCCGCAGAGCTTGAGCAGGCCGAGGTAACCATCAATCTACCTGCAGATTTCTATCTTGATGAGGACTATCTGCCAGAGGTTGACCGACGCGTTCTGGTGTACCGTCGTCTTGCCGCAGCTACAGAGCTTTCCGATGTTGATGCGCTTCAGCAAGATACCGAGAATAGCTTTGGTGCCCTGCCGCTTGCAGGTAAGAACTTGTTTGATCGTGCCCGCGTGCGCATCCGCGCGCAGCGTTTGGGCGCAACGTCAGTAAGCCTGACAAATGGTCGCCTGGTATATCTGGGTGTAGAAATTCCTCGCGAACAAGCCCTCAAGTTGAAGGGCCGCGGTGCTATTGTGTATCCAAAGACGCATAAACTAGCGTATCCGTTCCACCGAAATGAAGAGCAGCTGATGCCCGCCGCCCTGGGAGTTCTTGAAGAGCTTGGTGGCGACGACGAGGTTGAGGAGTAA
PROTEIN sequence
Length: 1148
VFINRVAAQLLSAPELEKLKRELSRGSDATLSLSQSARPLMLAALWAQNPRPCLLVVAGEDAADRTARSLAAWLGNDAVLRYPNRKDRPWSDTTPDDALIGARCRAIAKLSAGEKVIVVASAHALMRRVPPVGSGYFLPATFTVGDDVPFEDVASLLVGMGYADTGEVDAPGTFHIHGDTVDIFPAQATSPVRIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKETIRCAEEALYTRAQENSALAADLELIQRGAQAPALERYLPVLYGGSASPLEHISSETLVVLAEPRSLFDDCQRAFDEISASAAASKVKLDGLYTDPKAMDFGSQQRLSFSSLLRTGAVVTSELSVVQPSIAGSDAKLLGRVRQLVQDRDAVVFAVPDRAAREHLKLLFSDESIPFEESLGTALENEPDQNGAYAPLKRGRVTFTDAPVPAGIIIPTANLAVLSVSDLTARSARNKKRSKRIDPTTVTFPFKPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYANDDKLYVPLEQVDRITRYVGPDGNNPRLTRLNTADWSRATNKARKSAKKLAFDLVDLYTRRASVPGYAFSLDTPAQEEMESSFPYQLTPDQESAVADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQDARQVMILCPTTILAQQHYETFFSRFAPFDLKVSVLSRFVTPAQQKKALEGFADGTVDVLVGTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMSGVRDMSLILTPPPGRKPVQVMVGEYNPDLVSAAIRSELEREGQVYYVSNRVTTIDEAVARVEEAAPEARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLIIEDSQRLGLAQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLTAINEFQDLGSGMRIAMRDLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGEAVAEARGESAELEQAEVTINLPADFYLDEDYLPEVDRRVLVYRRLAAATELSDVDALQQDTENSFGALPLAGKNLFDRARVRIRAQRLGATSVSLTNGRLVYLGVEIPREQALKLKGRGAIVYPKTHKLAYPFHRNEEQLMPAALGVLEELGGDDEVEE*