ggKbase home page

L2_013_122G1_scaffold_456_11

Organism: dasL2_013_122G1_concoct_57_fa

near complete RP 48 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 11574..16004

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1190620 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. ICM42b.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.9
  • Coverage: 1476.0
  • Bit_score: 2918
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8W807_ATOPD similarity UNIREF
DB: UNIREF100
  • Identity: 99.1
  • Coverage: 1476.0
  • Bit_score: 2890
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 99.1
  • Coverage: 1476.0
  • Bit_score: 2890
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Atopobium sp. ICM42b → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 4431
GTGGCAGATTTCGATTCCACTGAATTTGACGCTATTAAAATTTCTCTAGCGTCTGCTGATGATATCCGCGGTTGGTCCTATGGCGAGGTAAAGAAGCCTGAGACCATCAACTACCGTACCCTTAAGCCAGAAAAGGACGGTCTTTTCTGCGAGAAGATCTTTGGACCTGTAAGGGACTGGGAGTGCGCCTGCGGTAAGTACAAAGGCATTCGCTTCAAGGGCATTACCTGCGAGCGCTGCGGTGTTGAAGTAACCACCGCAAAGGTTCGTCGTGACCGCATGGGCCACATCGAGCTCGCTGCTCCTGTAAGCCACATTTGGTACTTCAAGAGCCCAACCAGCTTCCCTCTGGCACGTCTTCTTGACATCAAGAGCAAGGACCTCGAGAAAGTCCTCTACTTTGCATCTTACGTAATCACCAGTGTTGACACTGAGGCACGTGAGGCTGACGTAGACGATCTTCGTGAGGAGCTTGCAGCAGACCTCGAAGAGCTTGACGCAGAGCGTGACGATCAGATCGCACGTCTTCGCGAGCAGGGCCAGCCACAGGATGACGAGTTTGGCGATTTTGAGCCTCTTTCTGAGGACGAGATTCGTGCAGGCGTCGCTGATCTTGAGGAAGAGTACGAGGAAGAGAAGACACTTCGTCGTGAGGCTTTCGAGAAGTTCATGCAGCTTGAGACTAGAGAGCTCATCTCTGATGAGGGTCTGTTCTCCGAGCTTAAGCGCTACTACGGCATCTACTTCAAGGGTGGTATGGGCGCAGAGGCAGTCCGTGACCTTCTTTCCAACATTGACCTTGAGAAAGAGGCCAAGGAGCTCCGCGCTATTATCGCCAATGAGGATGCTCAGAAGCAGAAGCGCGAGAAGGCCATTAAGCGCCTTGAGATTGTTGACGCTTTCCTTAAGGGCGGCAACGATCCAGCTAACATGATCCTTGACGTTGTACCAGTTATTCCACCTGATCTTCGTCCTATGGTTCAGCTTGATGGTGGCCGTTTTGCAGCTTCTGACTTAAACGATTTGTATCGTCGTGTTATTAACCGTAACAATCGTCTTAAGCGCCTGCTTGACCTTGAGGCACCTTCTATCATTGTTAACAACGAGAAGCGCATGCTTCAGGAGTCCGTTGACGCTCTGTTTGACAACGGTCGCCGTGGTCGTCCAGTCACTGGTCGTGGTGGACGTCCTCTGAAGTCTCTTGCTGAGGCCCTTAAGGGTAAGCAGGGTCGCTTCCGTCAGAACCTTCTTGGTAAGCGTGTTGACTACTCTGGCCGTTCCGTCATTGTTGTTGACCCACACCTGAAGCTGCACCAGTGCGGTCTTCCATCTGCTATGGCACTTGAGCTCTTCAAGCCATTTGTCATGCGTCGTTTGGTTGAGCTCCGCAAGGTTGAAAACATTAAGGGCGCAAAGCGCGCTATTGACCGTGGTACTCCAGTTGTTTGGGACGTTCTGGATGAGGTCATTCAGGACCGCCTCGTTCTTCTCAACCGCGCACCTACCCTTCACCGTCTGTCTATCCAGGCATTTGAGCCAGTCCTTATCGAGGGTAAGGCAATCCACCTGCACCCTCTGGTCTGCGCACCATTCAACGCAGACTTCGACGGCGACCAGATGTCTGTCCACGTGCCACTTTCTACTCAGGCACAGACAGAGGCTCGCATTCTGATGCTCTCCAGCAACAACCTCAGAAGCCCTGCTTCTGGTAAGGTTCTGACCGTTCCTTCTCAGGATATGGTCTTTGGTGTCTACTACCTCACTTCCGAGAAGACCGGTGAAGACGCTAAGACTCTTACCTTTGCAAGCTTTGAGGATGCTCTTCTGGCTATTGAGGCTAACCGTGACCTTGATCTTCAGGCAAAGGTTGTTGTCCGCGTAAGCTCTAAGGATGCAAACGTTGCTGATAGCGATCGTGCTATCTTCCGCGTTATGACTGGCCGCGGTCAGTATGAGGACCTGGACGTTACTGAGGGCACCAAGCGTTTTGAGACCACTGTTGGTCGCATTATCTTCAACCGTCAGTGCCTGCCAGAGGATTACCCATACATCAACTACAAGATGGTCAAGTCCGACATTGGCATTCTGGTCAACGATTGCTGCGACCGTTATCCAATGGCTGATGTTGAGCCAATTCTGGACAACATCAAGAAGACTGGTTTCCACTACGCAACTCTTGCTGGTCTGACCGTTTCTGTTTGGGACGCTGTTATTCCTCCACACAAGCCACAGCTGCTTCAGGAGGCACAGGACCGCGTTGACCAGATCAACGAGTACTACGAGGACGGCTTCCTTTCCGAGCGAGAGCGTCACGTTGAGGTTGTTAACGCATGGACCGAGTGCACCGATCTTCTCGGCTCTGAGATGCTTACAGGCTTTGCAGAGAACAATCCAATTTACATGATGGCTGACTCTGGAGCTCGTGGTTCTAAGACACAGCTTCGCCAGCTTGCTGGTATGCGAGGCCTGATGGCGGATATGTCCGGTGAGACCATCGACCTTCCAATTAAGGCAAACTTCCGCGAGGGTCTTGAGCCTCTTGAGTACTTCATTTCTACCTACGGCGCTCGTAAGGGTCTGGTAGATACCGCTTCCCACACCTCCGACTCTGGTTACCTGACTCGTCGTCTTGTCGACGTTGCACAGGACGTCATTGTCCGCGAGGAGGACTGCGGTACTGATGAGGCAGTTACCTATCCTCTGATTAAGCCTGGTCAGACCTCTGTTGATACTGACCTGATTGGCCGCTGCACCCTTGAGGATGTCTGCGATCCAAACACTGGCGAGGTTCTTATCCCTGCTGGTGGCTATGTTGAGTCCAAGCAGGATCTTGAGCGTCTTGTTGAGCACGGCCTTGCTAAGGTTCAGCTCCGCGCGCTTCTGACCTGTAAGTCTAAGTACGGCGTCTGCCAGAAGTGCTACGGCTGGGATCTTTCCACCCGTCGTCCTGTCAACATTGGTACTGCAGTTGGTATTATCGCAGCTCAGTCCATTGGTGAGCCTGGTACTCAGTTGACCATGCGTACCATTCACTCCGGTGGTGTTGCAGGCGCAGACGATATTACGCAGGGTCTTCCTACCGTTGCTCGTATGTTCGACGTCGTCGGCAACGTCAACGAGAAGATTCTTGGTCGCGAGGCTGACCTGGCTCCTGTTTCTGGTGTTCTTCACATTACCCCAGAGACCACCGAGTACCTGCTGCGTATTGTTGATGCAGACGATGCTTCCCGTGTCATCGAGGAGTGGCGTGTACCTGCATCTGTCCGCTTCATGCCTGGCATTGAGGATGGCGTTGTTGTCCGTGCTGGTGACCAGATTACCCGCGGCTTCGTCAACTTCCGTATGCTTCGCCGACTCACAGACATTGAGTCCACTATGCACACCTTCGTTGAGTCCGTTAAGGACGTCTATACCTCCCAGGGTGTAGAACTCAACGATAAGCACATCGAAGTTATCGCACGTCAGATGCTTCGTCGTGTTCAGGTTACCAACCCAGGTGACTCTTCGTACCTGCTTGGTCAGTATGTGGACCGCTATGTCTTCGCAGAGACTGTCCAGAACATTGCCCTTGCTGGTGGTACTCCACCAGAGGCAGAGCCAGCAATCCTTGGTACTCTGAAGGTTGCAAGCTCTATCGATTCTTGGCTCTCCAGCGCATCGTTCATTCGTACTGCAGGCGTTCTTACCTCTGCAGCTATCGAGGGCGACGTTGACCACCTGCTTGACCTCAAGTCCAACGTTATTGTTGGTAAGCAGATTCCTGCAGGTACTGGTCTCTCCGCATACAACGATGTTGAGCTTACCTATCACGGCACCAAGATTGATGGCCCAACCTCTTCTCTTGCTAAGTCTCTTCCAGACTGGGCACCAGCAGAGCTTAAGGACATCGAGGAGCAGCTTCCTAAGCAACTTGACTGGGTCAACGAGGATTACAACGGTGGCGTTTACTCCAAGAATGGCCGCACGCTTTCAAGCGAGGACGCAAAGCTGTACCTCTTCGACGATCTTGGCGTGTCACAGCGTTGGACCAACAAGTTCAGCGAGGTTGGCATTGAGACCGTAGGCGATCTTATCGGTAAGACCGAGGAAGACCTGCTTCGCATCGATGGTATTGGTGCAAAGGCAATTGAGGAGCTTCGCGATGGCCTTGAGGCTCGTAACCTCCTCTACATCCTTGAGCCAGAAGAGGATGAGGCAGATTCTGAGGATCTTTCTCAGCTGCTCAACATGGTCTTCTCGCCAGAAGGCGATGGCGGCTTGATGCTGGGCTCTGCAGCTCCATCCACTCACTCTGATTACACCGAGACACTCATCGGTTCTTCTTCCGACGAGGTTAGCCCTGATGTAATCAACGAGGACCTTGGTTCTCTGGATGACCTTCTCAATCAGGTTGTCCGCATGGATGCTGAGGCAGACGGCGAAGACGAGTAA
PROTEIN sequence
Length: 1477
VADFDSTEFDAIKISLASADDIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPVRDWECACGKYKGIRFKGITCERCGVEVTTAKVRRDRMGHIELAAPVSHIWYFKSPTSFPLARLLDIKSKDLEKVLYFASYVITSVDTEAREADVDDLREELAADLEELDAERDDQIARLREQGQPQDDEFGDFEPLSEDEIRAGVADLEEEYEEEKTLRREAFEKFMQLETRELISDEGLFSELKRYYGIYFKGGMGAEAVRDLLSNIDLEKEAKELRAIIANEDAQKQKREKAIKRLEIVDAFLKGGNDPANMILDVVPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDLEAPSIIVNNEKRMLQESVDALFDNGRRGRPVTGRGGRPLKSLAEALKGKQGRFRQNLLGKRVDYSGRSVIVVDPHLKLHQCGLPSAMALELFKPFVMRRLVELRKVENIKGAKRAIDRGTPVVWDVLDEVIQDRLVLLNRAPTLHRLSIQAFEPVLIEGKAIHLHPLVCAPFNADFDGDQMSVHVPLSTQAQTEARILMLSSNNLRSPASGKVLTVPSQDMVFGVYYLTSEKTGEDAKTLTFASFEDALLAIEANRDLDLQAKVVVRVSSKDANVADSDRAIFRVMTGRGQYEDLDVTEGTKRFETTVGRIIFNRQCLPEDYPYINYKMVKSDIGILVNDCCDRYPMADVEPILDNIKKTGFHYATLAGLTVSVWDAVIPPHKPQLLQEAQDRVDQINEYYEDGFLSERERHVEVVNAWTECTDLLGSEMLTGFAENNPIYMMADSGARGSKTQLRQLAGMRGLMADMSGETIDLPIKANFREGLEPLEYFISTYGARKGLVDTASHTSDSGYLTRRLVDVAQDVIVREEDCGTDEAVTYPLIKPGQTSVDTDLIGRCTLEDVCDPNTGEVLIPAGGYVESKQDLERLVEHGLAKVQLRALLTCKSKYGVCQKCYGWDLSTRRPVNIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGADDITQGLPTVARMFDVVGNVNEKILGREADLAPVSGVLHITPETTEYLLRIVDADDASRVIEEWRVPASVRFMPGIEDGVVVRAGDQITRGFVNFRMLRRLTDIESTMHTFVESVKDVYTSQGVELNDKHIEVIARQMLRRVQVTNPGDSSYLLGQYVDRYVFAETVQNIALAGGTPPEAEPAILGTLKVASSIDSWLSSASFIRTAGVLTSAAIEGDVDHLLDLKSNVIVGKQIPAGTGLSAYNDVELTYHGTKIDGPTSSLAKSLPDWAPAELKDIEEQLPKQLDWVNEDYNGGVYSKNGRTLSSEDAKLYLFDDLGVSQRWTNKFSEVGIETVGDLIGKTEEDLLRIDGIGAKAIEELRDGLEARNLLYILEPEEDEADSEDLSQLLNMVFSPEGDGGLMLGSAAPSTHSDYTETLIGSSSDEVSPDVINEDLGSLDDLLNQVVRMDAEADGEDE*