ggKbase home page

L2_013_122G1_scaffold_935_4

Organism: dasL2_013_122G1_concoct_57_fa

near complete RP 48 / 55 MC: 2 BSCG 50 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(2257..2778)

Top 3 Functional Annotations

Value Algorithm Source
16S rRNA-processing protein n=1 Tax=Atopobium parvulum (strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546) RepID=C8WAI1_ATOPD similarity UNIREF
DB: UNIREF100
  • Identity: 90.8
  • Coverage: 152.0
  • Bit_score: 277
  • Evalue 7.10e-72
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=936550 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium sp. BS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 94.8
  • Coverage: 173.0
  • Bit_score: 330
  • Evalue 1.30e-87
16S rRNA-processing protein similarity KEGG
DB: KEGG
  • Identity: 90.8
  • Coverage: 152.0
  • Bit_score: 277
  • Evalue 2.00e-72

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Atopobium sp. BS2 → Atopobium → Coriobacteriales → Coriobacteriia → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 522
TTGCGTAAACACTGGCGAGCAATTGCTCAAATTGTTAAAACGCATGGTAAAAGAGGGGAGGTTGTGACGGTTCCCGTTCACAGCCTTCCTTCTCTTATAGCTGAAGGCATGACAGTTGTTCCTGTTCCGCCTGCGCTTAAGGGACCAAGGAAGTTCTCAGTTGTCTCTGTTGAGTCAGATGACAGAGAAGGTAGTCTTGTAACTTTTGAAGACGTAACTACCATCTCAGACGCTGAAGAGCTTGTGGGTAAAACGCTTCTGGTAGAAGAAGATTGTCTTCCAGAAAACTTTGGTCTGGTCAATGTTTCTCTGCTTGTGGGTAGAGAAGTACTTGATATAGAACATGGTTCTCTGGGTGAAATTTCAGAGGTTCTTATTGGACCCACACAAAATGTGTGGGTACTTGAGGGACCTTTTGGCCAGGTAATGATGCCTGCTGTTGATGAATTTATCAAAGAGGCTCCAGCTGAGGGTCCCATTACCGTCTCAATTCCTCAGGGTCTTCTTAGGTTAGGTGAGTAG
PROTEIN sequence
Length: 174
LRKHWRAIAQIVKTHGKRGEVVTVPVHSLPSLIAEGMTVVPVPPALKGPRKFSVVSVESDDREGSLVTFEDVTTISDAEELVGKTLLVEEDCLPENFGLVNVSLLVGREVLDIEHGSLGEISEVLIGPTQNVWVLEGPFGQVMMPAVDEFIKEAPAEGPITVSIPQGLLRLGE*