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L3_114_000G1_scaffold_1351_11

Organism: dasL3_114_000G1_concoct_74_fa

near complete RP 49 / 55 BSCG 50 / 51 MC: 1 ASCG 14 / 38 MC: 1
Location: comp(10092..13553)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.0
  • Coverage: 1151.0
  • Bit_score: 2035
  • Evalue 0.0
transcription-repair coupling factor (EC:3.6.1.-) similarity KEGG
DB: KEGG
  • Identity: 64.6
  • Coverage: 1144.0
  • Bit_score: 1473
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3J4_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 1151.0
  • Bit_score: 2035
  • Evalue 0.0

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Taxonomy

Ruminococcus callidus → Ruminococcus → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3462
ATGCAGTTTTTTGCAGCTACATTTGAACAGCTGACAGCATACCGGGAACTGGTGCGGTCACAGCAGGAAGGAGTCACGCCGGTTTCGTTTACCGGTGTGTCGCAGATCCACAAAGCGCATCTGCTGACGGCGCTGTGCCGGGAAAATGCACCGGTGCTGGTGGTCACTGCCGAGGAGGCAGAGGCACGGCGGCTCTGCGATGACATCAACGCCATGCTGGATGAAACGGCGGCATGGATGTTTCCGGCAAAGGAGGTGGTGCTGACGCCGGTAGAGGGCATCACCACCGCCTATGAACACGCTCGTATCGCTGCACTGACGGCGCTCCGGACGGGACAGTGCCGGGTGGTCGCCGCCAGCATTGAGGCACTTTTGCAGCCGACCCTTTCACCGGAACAGCTGGACGACTCCACGATTTTGCTGCGCCGGGACGGCACGGCAGATCTGGGTGAACTCATCCGCCGGCTCTCTGCCTGCGGCTATGTCCGTGGGGAGAGCGTTTCCGGACAGGGACAGTTTTCCGTCCGGGGCGATATCCTGGATGTGTTCCCGGTACAGCTGAATGCGCCGGTGCGTATTGAGTTCTGGGATGATACCATCGACACCATGGTACATTTTGACCCGGAGACACAGCGCCGGACGGATGCTGTTGACGAAGTGCGCATTCCGCCGGCAAGGGAGACCCTGTGCGACCCGGCAGCGCTGGCGGAAAAGATCCGGAAACTAGGAAAATCCCTGCGCAGCCGCAGGGCAGACCTGGCACGGGAAAAGCTGTATGCCGATGCCGACCAGCTGGACGCCGGGATGCTTCCGGTGCATCTGGACAAATATGCGCCGCTGCTCCGGGAAAAGCCGTCCATGCTCTATGATTTCGGCATCGGGACGGTCTGCTGGAGCGAATACGGCGCAATCGTGGAGAGCCAGCGTGGACTGATGGCGCAGTACCAGGAGGACTGCAAGCTGCTGCTGGAAGAGGGCAGCCTTTGCCGTGGGCTGGAGGGCTACTATCAGAATCCCACGGAGGTTGCCGTACAGCTGGACAAACGCTTTCAGGTGTATCTCAGCAACTTTTTGCAGGGCGGCGAACACGTGGAATTTCAGAAACTGCTCAGCGTCCAGGCGGTGCAGAATGCGCCCTGGGGCGGTGAGCTGCGTCAGCTGACAGAGGATCTGAAAGCCTACTGTGAGCAGGGCTACTGCACCATGCTCTATGCCGGCAGTGAAAAAACGCTGCCTATTTTGCAGCAGGATCTCCGGGAAAGCGGCATCTGCTGCGAACTGGCGAAGCCGGACAGCATCTGGAAAGACGGCACGGTCTATCTCCGCACCGGCAGCCTTTCCGGTGGGTTTGCCTATCCGGAGATCAAGACGGCGCTGATTTCCCAGGCGAGAACGCTGCGTTCCGGCACACGCCGCCGAAAGACACATCATCGTGGGGAAGAGATACGCACCCTGGCAGACATTACGCCGGGAGATCTGGTGGTACACGCTCTGCACGGCATCGGGCGCTTTCTGGGCATCCGCAAGCTGGAACTGGAGGGCGTGACCAAGGATTATATCACCATCCAGTATGCCGGTAAGGAAAATCTGTATGTGCCGGTCACGCAGCTGGATATGGTGTCCAAGTATATCGGACCCCGTGAGGATTCCAACGTAAAGCTGAGCCGGCTGTCCTCGCCGGAGTGGCAGAAGACCCGGAACAACGTGCGCCGTGCGGTGCGGGATATGGCAGACGAACTGCTGGCGCTCTATGTCAAGCGGGAAAAGACCAAGGGCTTTGCGTTCTATCCGGACGACCAGGAACAGCGTGACTTTGAGGCACGTTTTCCTTATGTGGAGACGGAGGATCAGATGGCGTGCATTGATGAGATCAAGCACGACATGGAACGGGAACGCCCCATGGATCGGCTGCTCTGCGGCGACGTGGGATTCGGCAAGACAGAGGTGGCACTCCGGGCGGCGATGAAATGCGTCATGAGCGGAAAGCAGTGCGCTATTCTGGTGCCGACCACGGTTCTTGCCATGCAGCACTACCAGACGGCGCTGCGGCGGTTTGAGCATTTCCCGGTGAATGTGGTGATGCTGTCCCGGTTCGTCTCGGCAAAGCGGCAGAAGGAGATCCTCAAGGAGATCAAAAGCGGCAAGGCGGATGTTATCATCGGCACCCACCGCATTGTGCAGAAAGACGTGGAATTCCACGCCCTGGGTCTCGCCATTGTGGACGAGGAACAGCGGTTCGGCGTGGCGCACAAGGAGAAGTTCAAGCAGATGTTTGCCGGCGTGGATATGCTGACCCTGTCTGCGACGCCCATTCCCCGGACGCTGAACATGGCGATGAGCGGCATCCGGGATATGTCCGTCATCTCCCAGCCGCCGCAGGACCGCTATCCGGTGCAGACCTATGTGATGGAATACAGCGAACCGATGCTGGTGCAGGCGATTCAGCGGGAACTGAAACGGGGCGGTCAGGTGTACTACATCCACAACCGCATCGACACCATCGAGTTCACCGCATCCAAGCTGCAGAAATACCTGCCGGATGCCCGTATCCTGGTGGCGCATGGTAGGATGGGTGAGGCGGAAATGTCGGAGATCTGGCGCAAGCTGGTGGAACACGAGGCGGATATCCTGGTCTGCACTACCATTATTGAAACTGGTGTAGATGTTCCCAATGTGAACACGCTCATCATTGAAAATGCGGACTGTTTCGGACTTTCCCAGCTGTATCAGCTCCGGGGACGTGTGGGACGCTCCAACCGCCGGGCATATGCCTATTTCACATTCCAGCGGGACAAAGTCCTCCGGGACGAGTCGGCGAGACGGCTGGCGGCAATGCGGGAATTCACCCAGTTCGGCAGCGGCTTTCACATTGCCATGCGTGATCTGGAAATACGTGGCGCAGGCAGTCTGCTGGGCGGACAGCAGCACGGACACATGGAGTCGGTGGGCTACGATATGTATCTGCGGCTGCTGGGCGAGGCTGTGGCAGAGGCAAAGGGCGAGCCGATCCAGAAAACCGCAGAGTGTACGGTGGATATCCAGATCAGCGCCCATATTCCGGAAAGCTATATGGAGAGTCTGAGCCAGCGGCTGGATATGTACCGGAAGATCGCCAGCGTGCAGAACAGCGAGGACGAAATGGACCTGCTGGACGAACTCATCGACCGCTACGGCGAGCCGCCCAGGGAAGTGGTGGGGCTTATCACCGTTTCCCGGCTGCGGAACACGGCGGCACAGCTGGGCATCACGGAGATCAATCAGCGTGGCGGCGTGATGCTGTTCTATCTGGCACATCCCACGCCGGAGATGATCGGGGCGCTGTCGCAGAAATACCGGGGCAGAGTGCAGTTCGGCAGTGTGGGGAAGTCCTATCTGGGTGTCAGACTGGAGGACGAACCGCCGCTTGAACTGCTCCGGGACGTGCTGGAAATACTGGAAAAATCCGGGAATGGTATCAAATAA
PROTEIN sequence
Length: 1154
MQFFAATFEQLTAYRELVRSQQEGVTPVSFTGVSQIHKAHLLTALCRENAPVLVVTAEEAEARRLCDDINAMLDETAAWMFPAKEVVLTPVEGITTAYEHARIAALTALRTGQCRVVAASIEALLQPTLSPEQLDDSTILLRRDGTADLGELIRRLSACGYVRGESVSGQGQFSVRGDILDVFPVQLNAPVRIEFWDDTIDTMVHFDPETQRRTDAVDEVRIPPARETLCDPAALAEKIRKLGKSLRSRRADLAREKLYADADQLDAGMLPVHLDKYAPLLREKPSMLYDFGIGTVCWSEYGAIVESQRGLMAQYQEDCKLLLEEGSLCRGLEGYYQNPTEVAVQLDKRFQVYLSNFLQGGEHVEFQKLLSVQAVQNAPWGGELRQLTEDLKAYCEQGYCTMLYAGSEKTLPILQQDLRESGICCELAKPDSIWKDGTVYLRTGSLSGGFAYPEIKTALISQARTLRSGTRRRKTHHRGEEIRTLADITPGDLVVHALHGIGRFLGIRKLELEGVTKDYITIQYAGKENLYVPVTQLDMVSKYIGPREDSNVKLSRLSSPEWQKTRNNVRRAVRDMADELLALYVKREKTKGFAFYPDDQEQRDFEARFPYVETEDQMACIDEIKHDMERERPMDRLLCGDVGFGKTEVALRAAMKCVMSGKQCAILVPTTVLAMQHYQTALRRFEHFPVNVVMLSRFVSAKRQKEILKEIKSGKADVIIGTHRIVQKDVEFHALGLAIVDEEQRFGVAHKEKFKQMFAGVDMLTLSATPIPRTLNMAMSGIRDMSVISQPPQDRYPVQTYVMEYSEPMLVQAIQRELKRGGQVYYIHNRIDTIEFTASKLQKYLPDARILVAHGRMGEAEMSEIWRKLVEHEADILVCTTIIETGVDVPNVNTLIIENADCFGLSQLYQLRGRVGRSNRRAYAYFTFQRDKVLRDESARRLAAMREFTQFGSGFHIAMRDLEIRGAGSLLGGQQHGHMESVGYDMYLRLLGEAVAEAKGEPIQKTAECTVDIQISAHIPESYMESLSQRLDMYRKIASVQNSEDEMDLLDELIDRYGEPPREVVGLITVSRLRNTAAQLGITEINQRGGVMLFYLAHPTPEMIGALSQKYRGRVQFGSVGKSYLGVRLEDEPPLELLRDVLEILEKSGNGIK*