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QS_7_Viridiplantae_55_7

QS_7_Eukaryota_55_7
In projects: QS_7

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: QS_7_UNK

Properties

Avg. coverage: 6.61 Longest contig: 15.69 Kbp Bin length: 2.82 Mbp GC content: 55.30 %
Contigs count: 993 Features count: 2705 rRNAs count: 0 tRNAs count: 2

Genome completeness

partial RP 28 / 55 MC: 6 BSCG 15 / 51 MC: 4 ASCG 13 / 38 MC: 4
Displaying items 701-750 of 993 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qs_7_scaffold_9807
Species: Ostreococcus tauri (50%)
2 2104 bp 53.71 6.08 75.86
qs_7_scaffold_17604
Species: Ostreococcus tauri (50%)
2 1287 bp 53.61 7.85 94.17
qs_7_scaffold_2918
Species: Ostreococcus 'lucimarinus' (50%)
2 4519 bp 56.92 6.20 91.75
qs_7_scaffold_13227
Species: Brachypodium distachyon (50%)
2 1658 bp 56.94 5.91 98.43
qs_7_scaffold_8448
Species: Micromonas sp. RCC299 (50%)
2 3703 bp 55.47 6.00 67.89
qs_7_scaffold_17837
Species: Ostreococcus tauri (50%)
2 1272 bp 51.57 6.68 74.29
qs_7_scaffold_11847
Species: Micromonas sp. RCC299 (50%)
2 1820 bp 55.16 5.93 76.65
qs_7_scaffold_26875
Species: Coccomyxa subellipsoidea (50%)
2 1654 bp 55.26 6.83 60.22
qs_7_scaffold_21296
Species: Micromonas pusilla (50%)
2 1072 bp 65.30 6.25 87.31
qs_7_scaffold_15076
Species: Volvox carteri (50%)
2 2651 bp 54.09 5.88 53.75
qs_7_scaffold_9144
Species: Chlamydomonas reinhardtii (50%)
2 2222 bp 56.21 6.39 50.22
qs_7_scaffold_7072
Species: Tetraselmis sp. GSL018 (50%)
2 2650 bp 58.26 6.15 101.09
qs_7_scaffold_7995
Species: Micromonas sp. RCC299 (50%)
2 2442 bp 57.82 5.65 86.61
qs_7_scaffold_16922
Species: Tetraselmis sp. GSL018 (50%)
2 1336 bp 61.60 6.81 99.48
qs_7_scaffold_12314
Species: Tetraselmis sp. GSL018 (50%)
2 1763 bp 52.47 6.13 29.95
qs_7_scaffold_5461
Species: Monoraphidium neglectum (50%)
2 3127 bp 64.63 7.00 74.93
qs_7_scaffold_30565
Species: Eutrema salsugineum (50%)
2 1308 bp 56.04 6.96 102.29
qs_7_scaffold_15081
Species: Prunus persica (50%)
2 2031 bp 55.10 5.51 83.60
qs_7_scaffold_21302
Species: Glycine max (50%)
2 1072 bp 55.41 7.46 78.08
qs_7_scaffold_4772
Species: Cucumis sativus (50%)
2 3401 bp 55.07 6.94 95.00
qs_7_scaffold_10704
Species: Ricinus communis (50%)
2 1971 bp 56.62 6.70 92.24
qs_7_scaffold_12780
Species: Tetraselmis sp. GSL018 (50%)
2 2534 bp 56.71 5.76 88.91
qs_7_scaffold_21999
Species: Coccomyxa subellipsoidea (50%)
2 1039 bp 56.02 6.64 83.16
qs_7_scaffold_9152
Species: Chlamydomonas reinhardtii (50%)
2 2221 bp 57.00 5.90 88.74
qs_7_scaffold_18773
Species: Chlamydomonas reinhardtii (50%)
2 1210 bp 53.55 6.12 81.82
qs_7_scaffold_20617
Species: Coccomyxa subellipsoidea (50%)
2 1106 bp 61.39 8.77 94.94
qs_7_scaffold_12784
Species: Tetraselmis sp. GSL018 (50%)
2 1707 bp 54.77 7.85 85.24
qs_7_scaffold_6391
Species: Micromonas pusilla (50%)
2 3360 bp 59.11 6.76 84.64
qs_7_scaffold_29269
Species: Chlamydomonas reinhardtii (50%)
2 1268 bp 61.99 6.23 65.54
qs_7_scaffold_13246
Species: Micromonas pusilla (50%)
2 1656 bp 57.97 6.22 89.31
qs_7_scaffold_14629
Species: Ostreococcus tauri (50%)
2 1525 bp 53.51 6.95 92.46
qs_7_scaffold_13016
Species: Eucalyptus grandis (50%)
2 2670 bp 55.32 6.74 97.87
qs_7_scaffold_30602
Species: Gossypium arboreum (50%)
2 1321 bp 49.74 6.81 69.27
qs_7_scaffold_17396
Species: Coffea canephora (50%)
2 1300 bp 60.62 5.38 93.69
qs_7_scaffold_19701
Species: Capsella rubella (50%)
2 1155 bp 59.39 5.97 69.09
qs_7_scaffold_10023
Species: Selaginella moellendorffii (50%)
2 2069 bp 51.96 7.49 50.17
qs_7_scaffold_2930
Species: Physcomitrella patens (50%)
2 6261 bp 52.05 6.61 100.48
qs_7_scaffold_16015
Species: Ostreococcus tauri (50%)
2 1406 bp 56.69 6.33 104.13
qs_7_scaffold_19010
Species: Micromonas sp. RCC299 (50%)
2 1197 bp 58.90 6.43 78.20
qs_7_scaffold_10948
Species: Chlorella variabilis (50%)
2 1942 bp 53.66 5.77 67.82
qs_7_scaffold_9833
Species: Ostreococcus tauri (100%)
2 4220 bp 57.73 5.90 89.79
qs_7_scaffold_14866
Species: Micromonas pusilla (50%)
2 2211 bp 54.82 7.24 90.91
qs_7_scaffold_7782
Species: Tetraselmis sp. GSL018 (50%)
2 3459 bp 52.15 7.05 50.91
qs_7_scaffold_8473
Species: Erythranthe guttata (50%)
2 2344 bp 52.01 6.48 75.26
qs_7_scaffold_13484
Species: Volvox carteri (50%)
2 1632 bp 59.99 6.37 75.00
qs_7_scaffold_13945
Species: Micromonas sp. RCC299 (50%)
2 2176 bp 49.77 6.43 77.21
qs_7_scaffold_22700
Species: Oryza brachyantha (50%)
2 1009 bp 59.96 6.14 67.20
qs_7_scaffold_14176
Species: Ostreococcus 'lucimarinus' (50%)
2 2641 bp 51.76 7.27 49.53
qs_7_scaffold_30654
Species: Monoraphidium neglectum (50%)
2 1207 bp 55.92 5.80 45.48
qs_7_scaffold_8244
Species: Ostreococcus tauri (50%)
2 2392 bp 54.35 5.98 79.77
Displaying items 701-750 of 993 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.