ggKbase | organisms

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %

Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4

Displaying items 551-600 of 1078 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
qh_1_scaffold_16034 Species: Amborella trichopoda (50%)	2	2032 bp	47.05	5.22	44.44
qh_1_scaffold_19260 Species: Zea mays (50%)	2	1149 bp	59.62	6.09	76.50
qh_1_scaffold_22948 Species: Tetraselmis sp. GSL018 (50%)	2	1002 bp	51.30	7.29	75.75
qh_1_scaffold_20896 Species: Ricinus communis (50%)	2	1080 bp	49.72	5.46	58.61
qh_1_scaffold_21125 Species: Ostreococcus tauri (50%)	2	2034 bp	55.41	6.69	100.15
qh_1_scaffold_17189 Species: Monoraphidium neglectum (50%)	2	1252 bp	57.99	6.79	74.04
qh_1_scaffold_20413 Species: Micromonas pusilla (50%)	2	1099 bp	58.96	5.55	94.45
qh_1_scaffold_21775 Species: Monoraphidium neglectum (50%)	2	1046 bp	55.54	6.98	88.05
qh_1_scaffold_21358 Species: Micromonas sp. RCC299 (50%)	2	1061 bp	54.29	5.09	81.72
qh_1_scaffold_10047 Species: Tetraselmis sp. GSL018 (50%)	2	1826 bp	53.40	5.15	59.80
qh_1_scaffold_14195 Species: Micromonas sp. RCC299 (50%)	2	1435 bp	59.37	6.62	83.21
qh_1_scaffold_15347 Species: Arabidopsis lyrata (50%)	2	1359 bp	54.75	5.89	95.59
qh_1_scaffold_18111 Species: Ostreococcus 'lucimarinus' (100%)	2	1205 bp	58.51	7.47	47.80
qh_1_scaffold_20899 Species: Auxenochlorella protothecoides (50%)	2	1079 bp	57.37	4.54	89.53
qh_1_scaffold_13735 Species: Selaginella moellendorffii (50%)	2	1471 bp	58.12	6.25	101.56
qh_1_scaffold_4739 Species: Micromonas sp. RCC299 (50%)	2	2902 bp	54.96	6.82	93.56
qh_1_scaffold_8195 Species: Eucalyptus grandis (50%)	2	2076 bp	50.19	6.45	49.13
qh_1_scaffold_14427 Species: Monoraphidium neglectum (50%)	2	1418 bp	52.75	5.99	60.30
qh_1_scaffold_7735 Species: Micromonas sp. RCC299 (50%)	2	2152 bp	52.32	5.99	93.40
qh_1_scaffold_11202 Species: Auxenochlorella protothecoides (50%)	2	1697 bp	54.86	5.95	95.29
qh_1_scaffold_7737 Species: Micromonas pusilla (50%)	2	2152 bp	57.25	6.74	81.55
qh_1_scaffold_28057 Species: Volvox carteri (50%)	2	1468 bp	53.13	6.61	39.85
qh_1_scaffold_12357 Species: Chlorella variabilis (50%)	2	1586 bp	56.37	6.49	92.50
qh_1_scaffold_12588 Species: Bathycoccus prasinos (50%)	2	1564 bp	52.88	6.07	77.11
qh_1_scaffold_16735 Species: Selaginella moellendorffii (50%)	2	1279 bp	54.96	6.80	85.85
qh_1_scaffold_7278 Species: Micromonas pusilla (50%)	2	2236 bp	53.94	6.44	81.44
qh_1_scaffold_12589 Species: Ostreococcus 'lucimarinus' (50%)	2	2527 bp	54.21	6.45	57.93
qh_1_scaffold_7048 Species: Micromonas sp. RCC299 (50%)	2	2283 bp	50.02	6.18	94.74
qh_1_scaffold_7970 Species: Micromonas pusilla (50%)	2	2111 bp	60.49	6.35	68.64
qh_1_scaffold_8430 Species: Micromonas sp. RCC299 (50%)	2	2040 bp	53.58	5.98	83.82
qh_1_scaffold_10515 Species: Ostreococcus tauri (50%)	2	1772 bp	53.72	6.09	32.17
qh_1_scaffold_13741 Species: Ostreococcus 'lucimarinus' (50%)	2	1471 bp	53.91	5.17	73.83
qh_1_scaffold_14432 Species: Ostreococcus 'lucimarinus' (50%)	2	1418 bp	51.13	6.28	44.85
qh_1_scaffold_22013 Species: Bathycoccus prasinos (50%)	2	1035 bp	54.98	4.93	89.28
qh_1_scaffold_26993 Species: Chlorella variabilis (50%)	2	1501 bp	53.30	5.33	32.58
qh_1_scaffold_9814 Species: Micromonas pusilla (50%)	2	1853 bp	52.89	5.72	24.77
qh_1_scaffold_18811 Species: Ostreococcus tauri (50%)	2	1172 bp	51.45	7.76	93.43
qh_1_scaffold_12591 Species: Ostreococcus 'lucimarinus' (50%)	2	1564 bp	60.55	6.52	87.28
qh_1_scaffold_17661 Species: Musa acuminata (50%)	2	1228 bp	60.91	6.60	85.50
qh_1_scaffold_20656 Species: Coccomyxa subellipsoidea (50%)	2	1742 bp	55.74	5.57	77.67
qh_1_scaffold_10289 Species: Cucumis sativus (50%)	2	1798 bp	52.11	6.56	99.11
qh_1_scaffold_12823 Species: Brassica napus (50%)	2	1542 bp	55.84	6.29	77.82
qh_1_scaffold_17893 Species: Ostreococcus tauri (50%)	2	1216 bp	63.57	8.31	100.16
qh_1_scaffold_13285 Species: Chlorella variabilis (50%)	2	1502 bp	60.65	5.26	39.75
qh_1_scaffold_18585 Species: Micromonas sp. RCC299 (50%)	2	1183 bp	56.55	6.51	62.13
qh_1_scaffold_11211 Species: Micromonas pusilla (50%)	2	1696 bp	55.42	5.01	93.93
qh_1_scaffold_10752 Species: Wollemia nobilis (50%)	2	1746 bp	52.52	6.01	48.45
qh_1_scaffold_11212 Species: Monoraphidium neglectum (50%)	2	1696 bp	56.60	7.55	74.29
qh_1_scaffold_13517 Species: Micromonas sp. RCC299 (50%)	2	1486 bp	53.84	5.92	100.13
qh_1_scaffold_6133 Species: Ostreococcus tauri (50%)	2	2486 bp	52.90	5.75	82.54

Displaying items 551-600 of 1078 in total

QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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