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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 201-250 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_22539
Species: Micromonas pusilla (50%)
2 1636 bp 52.51 5.68 44.19
qh_1_scaffold_27274
Species: Micromonas sp. RCC299 (50%)
2 1674 bp 52.21 6.03 72.40
qh_1_scaffold_14268
Species: Ostreococcus tauri (50%)
2 1430 bp 57.48 6.57 82.24
qh_1_scaffold_6193
Species: Volvox carteri (50%)
2 2475 bp 55.92 6.18 87.15
qh_1_scaffold_6885
Species: Micromonas pusilla (50%)
2 2320 bp 56.94 4.66 95.43
qh_1_scaffold_9189
Species: Coccomyxa subellipsoidea (50%)
2 2901 bp 53.77 6.34 56.77
qh_1_scaffold_11042
Species: Micromonas sp. RCC299 (50%)
2 1714 bp 54.08 7.18 76.66
qh_1_scaffold_12196
Species: Ostreococcus tauri (50%)
2 1600 bp 55.13 6.88 98.25
qh_1_scaffold_21203
Species: Musa acuminata (50%)
2 1067 bp 54.08 6.00 69.17
qh_1_scaffold_20721
Species: Ostreococcus tauri (50%)
2 1086 bp 52.85 6.35 96.41
qh_1_scaffold_21435
Species: Jatropha curcas (50%)
2 1058 bp 50.09 7.28 44.52
qh_1_scaffold_38280
Species: Micromonas sp. RCC299 (50%)
2 1196 bp 56.27 5.94 64.21
qh_1_scaffold_22313
Species: Brachypodium distachyon (50%)
2 1024 bp 51.37 6.05 72.95
qh_1_scaffold_19802
Species: Citrus sinensis (50%)
2 1124 bp 54.27 5.25 90.75
qh_1_scaffold_22314
Species: Micromonas sp. RCC299 (50%)
2 1024 bp 58.59 6.54 42.77
qh_1_scaffold_25156
Species: Micromonas sp. RCC299 (50%)
2 1828 bp 57.71 5.91 90.75
qh_1_scaffold_14504
Species: Micromonas sp. RCC299 (50%)
2 1413 bp 58.17 6.23 80.04
qh_1_scaffold_13815
Species: Micromonas pusilla (50%)
2 2671 bp 53.91 5.80 85.81
qh_1_scaffold_18654
Species: Micromonas pusilla (50%)
2 2158 bp 53.48 5.19 41.29
qh_1_scaffold_20727
Species: Volvox carteri (50%)
2 1086 bp 53.59 5.16 75.14
qh_1_scaffold_10591
Species: Ricinus communis (50%)
2 1764 bp 56.52 6.12 68.88
qh_1_scaffold_16582
Species: Zea mays (50%)
2 1287 bp 54.08 7.15 86.71
qh_1_scaffold_19808
Species: Micromonas pusilla (50%)
2 1124 bp 57.74 4.98 89.41
qh_1_scaffold_5281
Species: Micromonas pusilla (50%)
2 2730 bp 50.55 5.64 98.57
qh_1_scaffold_11744
Species: Cucumis sativus (50%)
2 1645 bp 55.08 5.84 91.00
qh_1_scaffold_18197
Species: Micromonas pusilla (50%)
2 2080 bp 54.23 7.55 99.95
qh_1_scaffold_22092
Species: Genlisea aurea (50%)
2 1033 bp 59.24 6.00 71.15
qh_1_scaffold_5745
Species: Ulva fasciata (50%)
2 2584 bp 55.34 6.31 73.96
qh_1_scaffold_7127
Species: Tetraselmis sp. GSL018 (50%)
2 2269 bp 54.52 6.52 58.97
qh_1_scaffold_13820
Species: Prunus persica (50%)
2 1463 bp 56.12 6.29 98.43
qh_1_scaffold_18429
Species: Coccomyxa subellipsoidea (50%)
2 1190 bp 56.13 6.81 88.99
qh_1_scaffold_20987
Species: Ostreococcus 'lucimarinus' (50%)
2 1075 bp 56.93 5.77 81.77
qh_1_scaffold_21448
Species: Micromonas pusilla (50%)
2 1058 bp 48.49 5.86 47.07
qh_1_scaffold_8974
Species: Jatropha curcas (50%)
2 1963 bp 66.33 6.62 99.18
qh_1_scaffold_17740
Species: Micromonas pusilla (50%)
2 1224 bp 55.39 7.11 54.66
qh_1_scaffold_9435
Species: Ostreococcus tauri (50%)
2 2425 bp 54.10 6.10 96.49
qh_1_scaffold_18663
Species: Bathycoccus prasinos (50%)
2 1179 bp 45.04 10.01 83.71
qh_1_scaffold_21681
Species: Micromonas sp. RCC299 (100%)
2 1886 bp 54.03 4.83 101.33
qh_1_scaffold_32448
Species: Micromonas sp. RCC299 (50%)
2 1324 bp 61.33 6.19 99.24
qh_1_scaffold_6903
Species: Ostreococcus tauri (50%)
2 2317 bp 59.73 7.03 75.49
qh_1_scaffold_8747
Species: Oryza brachyantha (50%)
2 1995 bp 58.35 5.51 89.62
qh_1_scaffold_17052
Species: Picea sitchensis (50%)
2 1260 bp 57.06 5.48 80.48
qh_1_scaffold_20278
Species: Brassica napus (50%)
2 1104 bp 55.71 6.34 91.30
qh_1_scaffold_15440
Species: Chlamydomonas reinhardtii (50%)
2 1353 bp 53.36 5.99 26.39
qh_1_scaffold_17976
Species: Populus trichocarpa (50%)
2 1213 bp 53.83 5.94 70.73
qh_1_scaffold_16594
Species: Micromonas sp. RCC299 (50%)
2 1287 bp 51.05 7.15 91.38
qh_1_scaffold_26272
Species: Picea sitchensis (50%)
2 1421 bp 54.96 5.35 56.16
qh_1_scaffold_13138
Species: Brachypodium distachyon (50%)
2 2027 bp 55.70 6.66 96.35
qh_1_scaffold_19590
Species: Chlamydomonas reinhardtii (50%)
2 1847 bp 53.60 6.23 82.19
qh_1_scaffold_6215
Species: Selaginella moellendorffii (50%)
2 2469 bp 53.71 5.95 57.11
Displaying items 201-250 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.