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QH_1_Viridiplantae_55_6

QH_1_Eukaryota_55_6
In projects: QH_1

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: qh_1_UNK

Properties

Avg. coverage: 6.08 Longest contig: 4.44 Kbp Bin length: 1.79 Mbp GC content: 54.99 %
Contigs count: 1078 Features count: 1950 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 22 / 55 MC: 6 BSCG 14 / 51 MC: 3 ASCG 11 / 38 MC: 4
Displaying items 401-450 of 1078 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
qh_1_scaffold_16494
Species: Micromonas pusilla (100%)
1 1292 bp 58.36 5.88 91.49
qh_1_scaffold_14543
Order: Poales (50%)
4 1411 bp 53.93 6.09 91.42
qh_1_scaffold_14293
Species: Tetraselmis sp. GSL018 (100%)
1 1428 bp 62.25 5.32 91.39
qh_1_scaffold_16594
Species: Micromonas sp. RCC299 (50%)
2 1287 bp 51.05 7.15 91.38
qh_1_scaffold_20278
Species: Brassica napus (50%)
2 1104 bp 55.71 6.34 91.30
qh_1_scaffold_18211
Species: Micromonas pusilla (50%)
2 1200 bp 57.33 5.67 91.25
qh_1_scaffold_14341
Species: Tetraselmis sp. GSL018 (50%)
2 1427 bp 54.52 6.31 91.24
qh_1_scaffold_8065
Species: Hordeum vulgare (50%)
2 2095 bp 53.17 5.68 91.22
qh_1_scaffold_11131
Species: Tetraselmis sp. GSL018 (50%)
2 1704 bp 57.45 4.40 91.20
qh_1_scaffold_11839
Species: Ostreococcus tauri (50%)
2 1635 bp 55.96 6.36 91.19
qh_1_scaffold_5673
Order: Chlorellales (66.67%)
3 2606 bp 52.76 6.18 91.17
qh_1_scaffold_11516
Species: Chlorella variabilis (100%)
1 1667 bp 59.21 6.48 91.06
qh_1_scaffold_3482
Phylum: Streptophyta (50%)
4 4438 bp 62.33 7.89 91.05
qh_1_scaffold_12150
Species: Dolichomastix tenuilepis (50%)
2 1605 bp 59.88 5.30 91.03
qh_1_scaffold_11744
Species: Cucumis sativus (50%)
2 1645 bp 55.08 5.84 91.00
qh_1_scaffold_11487
Species: Physcomitrella patens (50%)
2 2221 bp 54.07 6.39 90.91
qh_1_scaffold_25156
Species: Micromonas sp. RCC299 (50%)
2 1828 bp 57.71 5.91 90.75
qh_1_scaffold_19802
Species: Citrus sinensis (50%)
2 1124 bp 54.27 5.25 90.75
qh_1_scaffold_21427
Species: Amborella trichopoda (50%)
2 2126 bp 54.70 5.97 90.73
qh_1_scaffold_10572
Species: Ostreococcus tauri (50%)
2 1766 bp 51.59 6.23 90.71
qh_1_scaffold_15952
Phylum: Streptophyta (66.67%)
3 2250 bp 55.29 5.69 90.67
qh_1_scaffold_20913
Species: Bathycoccus prasinos (50%)
2 1079 bp 58.94 5.65 90.64
qh_1_scaffold_10789
Species: Physcomitrella patens (50%)
2 1741 bp 60.43 5.97 90.64
qh_1_scaffold_8797
Species: Micromonas sp. RCC299 (50%)
2 2633 bp 54.65 5.96 90.58
qh_1_scaffold_11094
Species: Chlamydomonas reinhardtii (100%)
1 1707 bp 56.06 5.68 90.51
qh_1_scaffold_11139
Species: Micromonas pusilla (50%)
2 2718 bp 55.59 5.11 90.51
qh_1_scaffold_19222
Species: Suaeda eltonica (50%)
2 1708 bp 54.04 6.03 90.46
qh_1_scaffold_13923
Species: Selaginella moellendorffii (50%)
2 1456 bp 52.75 6.66 90.45
qh_1_scaffold_12632
Phylum: Chlorophyta (50%)
6 2323 bp 50.88 6.33 90.40
qh_1_scaffold_11761
Species: Micromonas sp. RCC299 (50%)
2 1643 bp 52.59 6.94 90.38
qh_1_scaffold_11194
Class: asterids (50%)
4 2285 bp 50.55 5.82 90.33
qh_1_scaffold_20455
Species: Tetraselmis sp. GSL018 (100%)
1 1097 bp 60.53 6.38 90.25
qh_1_scaffold_21013
Species: Micromonas pusilla (66.67%)
3 1074 bp 54.28 5.31 90.22
qh_1_scaffold_13540
Species: Chlorella variabilis (50%)
2 1484 bp 56.87 8.29 90.16
qh_1_scaffold_34129
Species: Chlamydomonas reinhardtii (50%)
2 1311 bp 54.69 6.79 90.16
qh_1_scaffold_15372
Species: Physcomitrella patens (50%)
2 1357 bp 55.20 5.82 89.98
qh_1_scaffold_22458
Species: Tetraselmis sp. GSL018 (50%)
2 1928 bp 52.23 5.34 89.94
qh_1_scaffold_5094
Domain: Viridiplantae (50%)
4 2792 bp 52.11 6.84 89.94
qh_1_scaffold_9548
Species: Micromonas sp. RCC299 (50%)
2 1888 bp 57.89 6.25 89.78
qh_1_scaffold_8110
Species: Setaria italica (50%)
2 2090 bp 54.21 6.60 89.71
qh_1_scaffold_5545
Domain: Viridiplantae (66.67%)
3 2646 bp 59.52 6.05 89.68
qh_1_scaffold_14236
Species: Auxenochlorella protothecoides (50%)
2 1432 bp 57.40 6.77 89.66
qh_1_scaffold_11242
Species: Monoraphidium neglectum (100%)
1 1693 bp 54.52 6.56 89.66
qh_1_scaffold_22600
Species: Chlorella variabilis (50%)
2 1014 bp 55.72 5.03 89.65
qh_1_scaffold_13742
Domain: Viridiplantae (66.67%)
3 2443 bp 56.49 7.37 89.64
qh_1_scaffold_8747
Species: Oryza brachyantha (50%)
2 1995 bp 58.35 5.51 89.62
qh_1_scaffold_10280
Domain: Viridiplantae (66.67%)
3 1798 bp 55.23 5.56 89.60
qh_1_scaffold_21596
Species: Genlisea aurea (100%)
1 1052 bp 56.08 5.51 89.54
qh_1_scaffold_20899
Species: Auxenochlorella protothecoides (50%)
2 1079 bp 57.37 4.54 89.53
qh_1_scaffold_8935
Phylum: Chlorophyta (66.67%)
3 2673 bp 56.64 5.95 89.45
Displaying items 401-450 of 1078 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.