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cn_combo_scaffold_12791_5

Organism: CN-SCN_Verrucomicrobia_15x

partial RP 9 / 55 BSCG 9 / 51 ASCG 1 / 38
Location: 3296..3874

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XJL6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 53.4
  • Coverage: 193.0
  • Bit_score: 213
  • Evalue 2.40e-52
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EEF59892.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Ped similarity UNIPROT
DB: UniProtKB
  • Identity: 53.4
  • Coverage: 193.0
  • Bit_score: 213
  • Evalue 3.40e-52
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 53.8
  • Coverage: 184.0
  • Bit_score: 200
  • Evalue 4.50e-49

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 579
ATGCCTGAGCCGGGCTTCGACCGAACATGGCTTGAAAGGGTCAAGTCCGGCGAGGATGAAGCCTCGCGTGAACTGATCCGCGAGCATTACGGATTGGTGCTCAAGATCGTTAGAGGCCATTTGCCCAGGCGAATGGATGAAGAAGATCTCGCCCAAATGATTTTTGTTAAAGTGTTTCAAAAAATCGAACAGTACAATGGCAGTGCGCCGCTCTCTCACTGGATTTCGCGGATCGCGGTCAATACCTGCCTGAACGAATTGCGCAGCGAAAAGGTCCGCCCGGAACTCCGTTGGGCGGATTTACATGAGGATGAAGCCTCCGCCCTCGACCGTGTGCTTGAGCAGAAGGAGGAAGCTTCTGCCGATGAACAAAGCGCCACGCGCGAGCTGGCGGCAAAGCTGCTGCAAACGCTTTCACCCCTGGATCGCGCAATCCTGACGATGATCGACCTCGAAGGCCGAACCATCGCCGAAGCCGCCGAAGCAACCGGGTCCAATGCCGGTGTGGTAAAAATTCGCGCGTTCCGGGCGCGCCGTAAATTACGCAAAGAACTTGAACGATTGGAGCGGACGAAATGA
PROTEIN sequence
Length: 193
MPEPGFDRTWLERVKSGEDEASRELIREHYGLVLKIVRGHLPRRMDEEDLAQMIFVKVFQKIEQYNGSAPLSHWISRIAVNTCLNELRSEKVRPELRWADLHEDEASALDRVLEQKEEASADEQSATRELAAKLLQTLSPLDRAILTMIDLEGRTIAEAAEATGSNAGVVKIRAFRARRKLRKELERLERTK*