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cn_combo_scaffold_11550_9

Organism: CN-SCN_Thiobacillus_729x

partial RP 25 / 55 BSCG 24 / 51 ASCG 3 / 38 MC: 1
Location: comp(3676..4404)

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L5 n=1 Tax=Thiobacillus thioparus RepID=UPI0003704C36 similarity UNIREF
DB: UNIREF100
  • Identity: 99.3
  • Coverage: 145.0
  • Bit_score: 287
  • Evalue 9.70e-75
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 99.3
  • Coverage: 145.0
  • Bit_score: 287
  • Evalue 1.40e-74
rplE; 50S ribosomal protein L5 similarity KEGG
DB: KEGG
  • Identity: 93.8
  • Coverage: 145.0
  • Bit_score: 281
  • Evalue 2.00e-73

Lists

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Notes

rpL5 fused to rpS14, likely a misassembly. Rose Kantor (1/2/14)

Taxonomy

RIFOXYA1_FULL_Hydrogenophilales_63_33_curated → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 729
ATGGCGCGTTTTCAAGAATTGTATCGTGAGACGGTGGTGCCCAAGCTGGTCGAGCAGTTTGGTTATAAATCCATCATGGAAGTGCCGCGTATCCAGAAGATCACCCTGAACATGGGGGTTGGTGAGGCTGTGGCTGACAAGAAGGTGATGGACCACGCAGTGGCTGACATGCAGAAAATCGCGGGTCAGAAGCCGGTTGTCACCAAGTCCAAGAAGTCGATTGCCGGCTTCAAGATCCGTGAGAACTATCCAGTCGGCTGCATGGTGACCCTGCGCCGCGCCCAGATGTACGAATTCCTGGATCGTCTGGTCACGGTGGCCATGCCGCGTATCCGCGACTTCCGTGGCATTTCGGGCAAGTCCTTCGATGGCCGTGGCAACTACAACATGGGTGTCAAGGAACAGATCATTTTTCCCGAGATCGAGTACGATTCCCGTTCAAGAATTGAGGTAGGCATGGCCAAGTTATCCTTGATTAATCGTGAAGAAAAGCGCGCGCGCATGGTGAAGAAATATGCTGCCAAGCGTGCAGAGCTCAAGGCCGTCATCGCCAATGTGGCGACCAGCGACGAAGATCGCATGGCGGCATACAAGACGTTGCAGGAGCTGCCGCGTAATTCCAGCCCTGTGAGACAGCGTAACCGCTGCCAATTGACGGGCCGGCCGCGTGGTGTGTTCAGCAATGCGATGCGGGGCGAGATCCCGGGCATCGTCAAGGCTAGCTGGTAA
PROTEIN sequence
Length: 243
MARFQELYRETVVPKLVEQFGYKSIMEVPRIQKITLNMGVGEAVADKKVMDHAVADMQKIAGQKPVVTKSKKSIAGFKIRENYPVGCMVTLRRAQMYEFLDRLVTVAMPRIRDFRGISGKSFDGRGNYNMGVKEQIIFPEIEYDSRSRIEVGMAKLSLINREEKRARMVKKYAAKRAELKAVIANVATSDEDRMAAYKTLQELPRNSSPVRQRNRCQLTGRPRGVFSNAMRGEIPGIVKASW*