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cn_combo_scaffold_939_18

Organism: CN-SCN_Nitrosomonadales_20x

partial RP 30 / 55 MC: 17 BSCG 33 / 51 MC: 23 ASCG 11 / 38 MC: 8
Location: 17004..17540

Top 3 Functional Annotations

Value Algorithm Source
type VI secretion protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI0002E39BEB similarity UNIREF
DB: UNIREF100
  • Identity: 72.3
  • Coverage: 177.0
  • Bit_score: 252
  • Evalue 4.30e-64
Type VI secretion protein {ECO:0000313|EMBL:KJU79226.1}; TaxID=330 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudo similarity UNIPROT
DB: UniProtKB
  • Identity: 72.3
  • Coverage: 177.0
  • Bit_score: 252
  • Evalue 6.10e-64
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 70.0
  • Coverage: 180.0
  • Bit_score: 248
  • Evalue 1.80e-63

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Taxonomy

Pseudomonas pseudoalcaligenes → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 537
ATGTCCGAAAGCACTCAGCACAAACTCGATCGTATCCGCCCCCCGCGAGTCCAGATTACCTATGACGTCGAAATCGGGGACGCCATAGAGAAAAAGGAATTGCCGCTCGTTGTCGGCATTCTGGCCGATTTATCAGGCAAGCCTGTTTCCCCGCCACCCAAGGTGCGTGACCGTCGCTTCGTGGAGATCGACCGCGATAACTTTGACGAGATCCTGGCTTCCATCGCCCCGCGTCTTACGCTACAGGTTGACAACGCGCTGCAGAAGGACGGAAGCAAGTTCAGTATCGAACTGAACTTCAAATCCTTTGACGACTTCAGCCCCATCAATATCGTTCAGCAGGTGGCTTCATTAAGCCGCTTGTATGAAGCGCGCTTGCGGCTGCGCGATTTACTGACCAAGCTGGATGGAAACGACGACCTGGATCAGTTGCTGCAGGATATCGTAAACAACACCCAGGAACTGCAAGGGATTCGATCGGTATCGCCATCTCCTGCCGCAAGATCAGAAACCAACCCGGTTACAGAATCTGCCTGA
PROTEIN sequence
Length: 179
MSESTQHKLDRIRPPRVQITYDVEIGDAIEKKELPLVVGILADLSGKPVSPPPKVRDRRFVEIDRDNFDEILASIAPRLTLQVDNALQKDGSKFSIELNFKSFDDFSPINIVQQVASLSRLYEARLRLRDLLTKLDGNDDLDQLLQDIVNNTQELQGIRSVSPSPAARSETNPVTESA*