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cn_combo_scaffold_939_22

Organism: CN-SCN_Nitrosomonadales_20x

partial RP 30 / 55 MC: 17 BSCG 33 / 51 MC: 23 ASCG 11 / 38 MC: 8
Location: 20087..21853

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein TssF3 n=1 Tax=Pseudomonas fluorescens Q2-87 RepID=J2Y5E2_PSEFL similarity UNIREF
DB: UNIREF100
  • Identity: 58.9
  • Coverage: 603.0
  • Bit_score: 670
  • Evalue 2.20e-189
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Pseudomonas_63_210_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 57.8
  • Coverage: 602.0
  • Bit_score: 673
  • Evalue 2.10e-190
type VI secretion system protein ImpG similarity KEGG
DB: KEGG
  • Identity: 57.9
  • Coverage: 603.0
  • Bit_score: 661
  • Evalue 2.20e-187

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Taxonomy

R_Pseudomonas_63_210 → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1767
ATGAGCGATTCGATTGACGACACGCTCCTGGATTATTATCAGCGCGAGCTCGGCTACCTGCGCCAGGCGGGCGGGGAGTTTGCCGCGTCCTATCCGAAAATTGCGCATCGCCTTGCCCTCAGCGAATACGAATCTCCCGATCCGCACGTCGAACGCCTCCTGGAATGCTTCGCATTTCTCAGCGCCAAGCTTAATCGCAAGCTCGACGACGACTATACCCAGTTCAGCAATGCGCTGCTGGAACAGCTCTACCCGCATGCCATCCGGCCCCTGCCTGTGACCGCCATCGTCCGCTTCACGCCCGACCCGGCCAAGGGCAATCTCGCCGAAGGCTATCCCATCCCGCGCCGCACCCCGCTGTTTGCCACCACCGGCACCGGTGACACCATTTACTTCCGCACTACCGCCGCTCAAACCGTGTGGCCAGTGAAGATCAGCGCAGCCCATCTCCTCGACGCCGAACAGGCACAAGCGCTCAGCGGGCTCCCGCAGGCGCGTTCGGCGCTCAAGCTCACGCTGGAATGCCTGGCTCCGCATCAATGGTCCGCGCTGCCGATCGAGCGCCTGCGCATTCATCTGGCCGGCCCGGCCGTGACCAGTGCAGCGCTCTACGACCTTCTGGCCGCGCATAGCATCGGGTCCCTGACGCCGGAGCCGCTTGGCTTTGGCGCCGACGAGCGCCTGCTGCCGGAAGAAGGCGGTGTCGACCCCGTCTACAGCCTGCTTCCGGAATACTTCGCCTGCCCGGAAAAATTTCTCTTCTTCGACCTGCCATTACGCGACCGACCCCATCGTGCCAGCGCTACCACTCACCTGGACGTCATCATTCCCTTCGATCGGGAACCTGCGCACCAGATCACCCTCCAGGCAGGCGATATCGCGCTTGGGTGCGTGCCCGTGATCAATCTGTTTCCGCGCACCTCTGAACCCTTGCGGCCGGACGGAACGCGTAGCGAATATCTGCTGCTGGCCGATGTTCACCGCCGCCACAGCACGGAAATCTACCGCGTCTGCCAGGTGCGCGCCGGACAGGTCGGCAAGGCTGCTGTCATCCCGCCTTATTTTTCCATCGGCCACGGCGATGCAGCGGGTGGACACTACTGGCATGCCCGCCGTGTACGTCGCTCCGGGCATCAATCGGCTAGCGATATCCTGTTGACGTTGATTGATAGTCAGTTCGACCCCGCGAACTCCGGAAACGACAGCGCCCTGAGCGTGAGCGCACAACTGCTCTGCACCAACGGTAATCTTGCCGCGACTCTGCCGGCCGGTTGCCCGCTGGGTTTCGAAACCCTGGGGCCGGTCGCGCACGTCAGGCTGTTGCGCCAGCCGCCCCGATCCATTGAGGTACCCCTGGATGGACCCAGCCGTTGGCGCCTGGTTTCGCAACTCTCGCTCAACCATTTGTCGCTTGGCGAAGGTCCGCAGGCGCTGGCGGCGCTGCGGGAAATGCTCGCACTGCATAATCTGGGTGCCGATCCAGCGGTGCAGCAACAGATCAGCGGCATACAGGCGCTCGACAGCGAGCGCATCACCTCCCATGTCGGCCAGGATGCCTGGCGGGGCTGGCGCAACGGCCTGCAACTGACCTTGACGCTGAACCCGGACAGCTTTGCTGGAAGCAGCCCGGTCCTCTTCGCCGGCGTGCTCGCCCACTTTTTTGCGCGCTACGCATCCACCAACCGTTTCATCCGCACTGTGCTGCGGCTACACGATAGAGAGATTACACCGTGGCAACCACAAGTGGGCAGCCCGCTCGCGCTCTAG
PROTEIN sequence
Length: 589
MSDSIDDTLLDYYQRELGYLRQAGGEFAASYPKIAHRLALSEYESPDPHVERLLECFAFLSAKLNRKLDDDYTQFSNALLEQLYPHAIRPLPVTAIVRFTPDPAKGNLAEGYPIPRRTPLFATTGTGDTIYFRTTAAQTVWPVKISAAHLLDAEQAQALSGLPQARSALKLTLECLAPHQWSALPIERLRIHLAGPAVTSAALYDLLAAHSIGSLTPEPLGFGADERLLPEEGGVDPVYSLLPEYFACPEKFLFFDLPLRDRPHRASATTHLDVIIPFDREPAHQITLQAGDIALGCVPVINLFPRTSEPLRPDGTRSEYLLLADVHRRHSTEIYRVCQVRAGQVGKAAVIPPYFSIGHGDAAGGHYWHARRVRRSGHQSASDILLTLIDSQFDPANSGNDSALSVSAQLLCTNGNLAATLPAGCPLGFETLGPVAHVRLLRQPPRSIEVPLDGPSRWRLVSQLSLNHLSLGEGPQALAALREMLALHNLGADPAVQQQISGIQALDSERITSHVGQDAWRGWRNGLQLTLTLNPDSFAGSSPVLFAGVLAHFFARYASTNRFIRTVLRLHDREITPWQPQVGSPLAL*