ggKbase home page

cn_combo_scaffold_939_30

Organism: CN-SCN_Nitrosomonadales_20x

partial RP 30 / 55 MC: 17 BSCG 33 / 51 MC: 23 ASCG 11 / 38 MC: 8
Location: 28614..30620

Top 3 Functional Annotations

Value Algorithm Source
Type VI secretion protein ImpA n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1SWL1_PSEME similarity UNIREF
DB: UNIREF100
  • Identity: 79.3
  • Coverage: 668.0
  • Bit_score: 1107
  • Evalue 0.0
VgrG protein {ECO:0000313|EMBL:KIV72881.1}; TaxID=1604022 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. FeS53a.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.2
  • Coverage: 668.0
  • Bit_score: 1119
  • Evalue 0.0
Rhs element Vgr family protein similarity KEGG
DB: KEGG
  • Identity: 78.3
  • Coverage: 668.0
  • Bit_score: 1097
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudomonas sp. FeS53a → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2007
ATGTCCCGCCCAGCCGACACCTCAACCACCCTCTCCCTAACTGCCACGGCACTCCCGGACCTATTCCCGGAAACCCTGGCCGGCGAGGAGTCGTTGAACGGTCTGGGAGGATTCAACCTGAGCGGTCATAGCGCCACAGTGTTGACGCCGGATCGCGCGGTGGCCTCGCACCTCACAGCAACCCTGCATAACGAAGATATGGAACGGCCGCTGGATACGCTGTGTGCCGAAATCCGCCAGCTCCCCGCCGACGCCACCGCCGAGCGCTATCAGGTTATCCTGCGCCCTTGGCTGTGGTGGCTGGGGCTTGCCAGCAATAACCGGGTGTTCCAGAACCAGAGCACTCCGGACATCGTCACTGCTATCTTCAATACCCATGGTTTCAGCGACTACGAGTTGAAGCTCACCGGCAGCTACAGCCCGCGTGAATACTGCGTGCAGTACGGCGAAACCGATTTCGCCTTCGTCTTGCGGCTATTGGAAGAGGAAGGCATTTTCTGGTTTTTCATTCATGAAGAAGGCAAGCACACGCTGGTGCTGGCGGACAGCAATGAGGCGTTCCCGCCAATCCCCAACGGGCCAAAAGTAGCGTATCTCGGGCAGAAGATTGGGGAGCGCGAGCTGCATGGCATCCGTTCGGGGCAGCTATGTCTGCAAGCGGTGCCCGGGGCATATCGCGCTACCGACTATGAGTTTACTACCCCGACTGCCTCGCTCTATGGCCAGGCGGAGACGGTTGCAGGTCCCTCATCGATCTACGAGCATCCAGGCGGCTATACCACCAAGGCGCGGGGCGATACCTTGGCCAAGCAGCGGGTCGATGCCCTGCGCACCCAGGAGAAGCGCTTCGTCGGGGAGAGTGATTGCCGCTGGCTGGTGCCGGGGCACTGGTTTACCCTCACCGGGCATGACGACGAGACGTTGAACATCGACTGGGTCGTAACCTCGGTGACGCATGATGCCAGCCACGATCACTACCGCAACCGCTTCGAAGCGATTCCGAAAAGTACGCCCTACCGTCCACCCCGCATTACAGCCAGGCCGCGCATGCCTGCCCAGACTGCTCTGGTAGTGGGCAAAGCCGGCGAGGAAATCTGGACTGACCAGTACGGCCGCATCAAGATCCAGTTCCCCTGGGATCGCGACGGCAAGAACGATGAAACCAGCTCCTGCTGGGTGCGCGTGGCGCTCCCCTGGAGCGGCAAGGGCTTCGGCATGCAGTTCATCCCGCGCATCGGCCAGGAGGTGATCGTCACCTTCATCGATGGCGATCCGGATCGCCCGTTTGTGACGGGTTGCGTGTACAACGGCGATAACGTTCTACCCTATGCGTTGCCAGCCAACCAGACGCAATCCGGGATCAAAACCCAATCATCCAAGGGTGGCGAAGGATTCAACGAGCTGCGCTTCGAGGACAAGAAGGACAGCGAGGAAGTCTTTCTCCAGGCACAGAAGGACTTCAAGATCAATGTGCTCAATGACGCTACCAGCACCATCGGCCATGACGAGACCCTTACCATCAAGAATGCCCGCACCCGCACGGTGAAGGAAGGCGACGAAACCGTCACCCTCGAAAAAGGCAAGCGCAGCGTGACCATCCAGACCGGCAGCGATACGCTCGATGTGAAGGATACGCGCACGGTAAAGGTGGGCAGCAATCAGATCCATAGCACCGGTGGCAATTACACGCACGAAGTCAGCGGTAACTACCAACTGACTGTGGACGGCAACCTGACTATCAAGGTATCTGGCACTCTGACGCTGCAAAGCAGCGGCGATCTTACCGCTAAAAGCGATGCCAGCCTGACCAATCAGTCCGGCCTGGCGCTGACCAATAAAGCCGGCACCGGATTGACCAACCAGGCAGGCACTTCGCTGGACAACAAGGCCGGGACCACCCTGACCAATGACGCTGCAATTAGCCTGACCAGCAAGGCTGGCGCCACGCAGACCGTCGATGGCGGCGGCATGCTGGTATTGAAGGGCGGCATCATCAAGGCAAATTAG
PROTEIN sequence
Length: 669
MSRPADTSTTLSLTATALPDLFPETLAGEESLNGLGGFNLSGHSATVLTPDRAVASHLTATLHNEDMERPLDTLCAEIRQLPADATAERYQVILRPWLWWLGLASNNRVFQNQSTPDIVTAIFNTHGFSDYELKLTGSYSPREYCVQYGETDFAFVLRLLEEEGIFWFFIHEEGKHTLVLADSNEAFPPIPNGPKVAYLGQKIGERELHGIRSGQLCLQAVPGAYRATDYEFTTPTASLYGQAETVAGPSSIYEHPGGYTTKARGDTLAKQRVDALRTQEKRFVGESDCRWLVPGHWFTLTGHDDETLNIDWVVTSVTHDASHDHYRNRFEAIPKSTPYRPPRITARPRMPAQTALVVGKAGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVALPWSGKGFGMQFIPRIGQEVIVTFIDGDPDRPFVTGCVYNGDNVLPYALPANQTQSGIKTQSSKGGEGFNELRFEDKKDSEEVFLQAQKDFKINVLNDATSTIGHDETLTIKNARTRTVKEGDETVTLEKGKRSVTIQTGSDTLDVKDTRTVKVGSNQIHSTGGNYTHEVSGNYQLTVDGNLTIKVSGTLTLQSSGDLTAKSDASLTNQSGLALTNKAGTGLTNQAGTSLDNKAGTTLTNDAAISLTSKAGATQTVDGGGMLVLKGGIIKAN*