ggKbase home page

cn_combo_scaffold_3763_1

Organism: CN-SCN_Nitrosomonadales_20x

partial RP 30 / 55 MC: 17 BSCG 33 / 51 MC: 23 ASCG 11 / 38 MC: 8
Location: 2..562

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y5E3_NITMU similarity UNIREF
DB: UNIREF100
  • Identity: 95.2
  • Coverage: 186.0
  • Bit_score: 345
  • Evalue 3.00e-92
RNA polymerase factor sigma-32 similarity KEGG
DB: KEGG
  • Identity: 95.2
  • Coverage: 186.0
  • Bit_score: 345
  • Evalue 8.50e-93
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria similarity UNIPROT
DB: UniProtKB
  • Identity: 95.2
  • Coverage: 186.0
  • Bit_score: 345
  • Evalue 4.20e-92

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Nitrosospira multiformis → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 561
GTCCGGCTGGTTTCATTTGCAGTACACTGGATCAAGGCTGAAATCCACGAATTCATACTGCGCAACTGGCGGCTGGTTAAAATTGCCACGACAAAGGCCCAGCGCAAGCTGTTTTTCAATTTGCGCAGCCTGAAACAGGCGCTCGATACCATGAGCCCGGAGGAAGTTGCGGACGTTGCAAAACAACTGGATGTGAAGCCTGAGGAAGTGGTGGAAATGGAGACCCGCTTCAGCGGCCGTGATATTTCACTCGAACCGTTGTCGGAAGACGACGATGAGGAAACATTCAGCCCCATTGCTTACCTGACCGATGGTTCCGAACCCTCGCACGTGCTGGAGAACGAGCAAACCCTGCGTCTGCGGGGTGAAGGACTGGAGCAGGCGCTTGAGAGCCTGGATGCACGCAGCCGTCACATCATCGAGGCCCGCTGGCTGCAGGAAAAAGATACGGCAACGCTGCATGAGCTCGCCGATGAGTTGGGAGTCTCCGCAGAGCGCGTTCGACAGATCGAAGCCAAAGCCATGCAGAAGCTGCGCACGGTCATGGCTCCTGCCGCCTGA
PROTEIN sequence
Length: 187
VRLVSFAVHWIKAEIHEFILRNWRLVKIATTKAQRKLFFNLRSLKQALDTMSPEEVADVAKQLDVKPEEVVEMETRFSGRDISLEPLSEDDDEETFSPIAYLTDGSEPSHVLENEQTLRLRGEGLEQALESLDARSRHIIEARWLQEKDTATLHELADELGVSAERVRQIEAKAMQKLRTVMAPAA*