ggKbase home page

AMDSBA2_33_12
Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase, sigma 28 subunit, SigI KEGG
DB: KEGG
46.1 232.0 198 2.20e-48 tmr:Tmar_0851
RNA polymerase, sigma 28 subunit, SigI {ECO:0000313|EMBL:ADU50965.1}; TaxID=644966 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter. UNIPROT
DB: UniProtKB
46.1 232.0 198 1.10e-47 E6SIX0_THEM7
RNA polymerase, sigma 28 subunit, SigI n=1 Tax=Thermaerobacter marianensis DSM 12885 RepID=E6SIX0_THEM7 (db=UNIREF evalue=2.7e-48 bit_score=198.0 identity=46.1 coverage=91.869918699187) similarity UNIREF
DB: UNIREF
46.0 91.0 198 2.00e+00 tmr:Tmar_0851
seg (db=Seg db_id=seg from=173 to=188) iprscan interpro
DB: Seg
0.0 0.0 0 0.0 tmr:Tmar_0851
(db=HMMPfam db_id=PF04542 from=28 to=97 evalue=1.0e-08 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 tmr:Tmar_0851
spore_sigI: RNA polymerase sigma-I factor (db=HMMTigr db_id=TIGR02895 from=14 to=238 evalue=5.6e-59 interpro_id=IPR014244 interpro_description=RNA polymerase sigma-I type) iprscan interpro
DB: HMMTigr
0.0 0.0 0 5.00e+00 tmr:Tmar_0851
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=14 to=98 evalue=6.5e-16 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto iprscan interpro
DB: superfamily
0.0 0.0 0 6.00e+00 tmr:Tmar_0851
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=23 to=228 evalue=7.3e-10 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
0.0 0.0 0 7.00e+00 tmr:Tmar_0851