Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RNA polymerase sigma-30 factor (Sigma(H)) {ECO:0000313|EMBL:CCX49850.1}; TaxID=1262781 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" s |
UNIPROT
DB: UniProtKB |
42.2 | 199.0 | 170 | 2.10e-39 | R5B2N1_9CLOT | |
sigH; RNA polymerase sigma-30 factor SigH |
KEGG
DB: KEGG |
41.3 | 201.0 | 163 | 6.70e-38 | blh:BaLi_c01170 | |
RNA polymerase factor sigma-70 n=2 Tax=Bacillus RepID=K6DLZ2_9BACI | similarity |
UNIREF
DB: UNIREF90 |
42.0 | null | 162 | 1.70e-37 | blh:BaLi_c01170 |
HTH_LUXR_1 (db=PatternScan db_id=PS00622 from=171 to=198 evalue=0.0 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565)) | iprscan |
interpro
DB: PatternScan |
0.0 | 0.0 | 0 | 0.0 | blh:BaLi_c01170 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=155 to=198 evalue=0.0007 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 7.00e-04 | blh:BaLi_c01170 |
no description (db=HMMSmart db_id=SM00421 from=154 to=209 evalue=0.0022 interpro_id=IPR000792 interpro_description=Transcription regulator LuxR, C-terminal GO=Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Cellular Component: intracellular (GO:0005622), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sequence-specific DNA binding (GO:0043565)) | iprscan |
interpro
DB: HMMSmart |
0.0 | 0.0 | 0 | 2.20e-03 | blh:BaLi_c01170 |
(db=HMMPfam db_id=PF08281 from=156 to=198 evalue=1.4e-07 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 1.00e+00 | blh:BaLi_c01170 |
C-terminal effector domain of the bipartite response regulators (db=superfamily db_id=SSF46894 from=135 to=199 evalue=1.0e-09 interpro_id=IPR016032 interpro_description=Signal transduction response regulator, C-terminal effector GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Molecular Function: DNA binding (GO:0003677), Cellular Component: intracellular (GO:0005622), Biological Process: | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 1.00e+00 | blh:BaLi_c01170 |
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=25 to=203 evalue=2.8e-23 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 | iprscan |
interpro
DB: HMMTigr |
0.0 | 0.0 | 0 | 2.00e+00 | blh:BaLi_c01170 |
(db=HMMPfam db_id=PF04542 from=30 to=98 evalue=3.8e-11 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 3.00e+00 | blh:BaLi_c01170 |
RNA polymerase sigma-H factor (db=HMMPIR db_id=PIRSF002939 from=1 to=208 evalue=5.8e-58 interpro_id=IPR016371 interpro_description=RNA polymerase sigma-H factor GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription, DNA-dependent (GO:0006351), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPIR |
0.0 | 0.0 | 0 | 5.00e+00 | blh:BaLi_c01170 |
no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=26 to=99 evalue=6.4e-09) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 6.00e+00 | blh:BaLi_c01170 |
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=15 to=100 evalue=6.1e-19 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 6.00e+00 | blh:BaLi_c01170 |