ggKbase home page

AMDSBA2_270_1 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
rpoE; RNA polymerase sigma-24 subunit KEGG
DB: KEGG
34.6 185.0 124 2.70e-26 amr:AM1_1207
RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:ABW26244.1}; TaxID=329726 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strai UNIPROT
DB: UniProtKB
34.6 185.0 124 1.30e-25 B0C3Y4_ACAM1
RNA polymerase sigma-24 subunit n=2 Tax=Acaryochloris RepID=B0C3Y4_ACAM1 (db=UNIREF evalue=3.3e-26 bit_score=124.4 identity=34.6 coverage=84.43396226415094) similarity UNIREF
DB: UNIREF
34.0 84.0 124 3.00e+00 amr:AM1_1207
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=28 to=112 evalue=1.2e-14) iprscan interpro
DB: Gene3D
0.0 0.0 0 1.00e+00 amr:AM1_1207
(db=HMMPfam db_id=PF08281 from=142 to=191 evalue=1.8e-12 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 amr:AM1_1207
(db=HMMPfam db_id=PF04542 from=44 to=112 evalue=2.0e-16 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 2.00e+00 amr:AM1_1207
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=130 to=197 evalue=4.7e-13 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
0.0 0.0 0 4.00e+00 amr:AM1_1207
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=18 to=131 evalue=7.2e-24 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma fact iprscan interpro
DB: superfamily
0.0 0.0 0 7.00e+00 amr:AM1_1207
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=39 to=195 evalue=9.7e-39 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
0.0 0.0 0 9.00e+00 amr:AM1_1207