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AMDSBA2_283_1 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase ECF-type sigma factor KEGG
DB: KEGG
37.2 191.0 129 7.70e-28 sth:STH2962
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAD41945.1}; TaxID=292459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacteriu UNIPROT
DB: UniProtKB
37.2 191.0 129 3.80e-27 Q67K53_SYMTH
RNA polymerase ECF-type sigma factor n=1 Tax=Symbiobacterium thermophilum IAM 14863 RepID=Q67K53_SYMTH (db=UNIREF evalue=9.6e-28 bit_score=129.4 identity=37.2 coverage=90.40404040404042) similarity UNIREF
DB: UNIREF
37.0 90.0 129 9.00e+00 sth:STH2962
sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=16 to=173 evalue=1.9e-43 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:00169 iprscan interpro
DB: HMMTigr
0.0 0.0 0 1.00e+00 sth:STH2962
(db=HMMPfam db_id=PF04542 from=21 to=87 evalue=1.2e-18 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 1.00e+00 sth:STH2962
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=105 to=175 evalue=2.9e-13 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Funct iprscan interpro
DB: superfamily
0.0 0.0 0 2.00e+00 sth:STH2962
(db=HMMPfam db_id=PF08281 from=118 to=168 evalue=3.8e-15 interpro_id=IPR013249 interpro_description=RNA polymerase sigma factor 70, region 4 type 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 3.00e+00 sth:STH2962
no description (db=Gene3D db_id=G3DSA:1.10.1740.10 from=5 to=88 evalue=5.1e-22) iprscan interpro
DB: Gene3D
0.0 0.0 0 5.00e+00 sth:STH2962
Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=1 to=107 evalue=7.3e-26 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma facto iprscan interpro
DB: superfamily
0.0 0.0 0 7.00e+00 sth:STH2962