Advanced Search

ACD5_175_26 Annotations

Value	Algorithm	Source	Identity	Coverage	Bit score	Evalue	Cross references
radical SAM domain protein (db=KEGG evalue=5.0e-24 bit_score=115.0 identity=27.25 coverage=74.7663551401869)	similarity	KEGG DB: KEGG	27.25	74.77	115	5.00e-24
coiled-coil (db=Coil db_id=coil from=194 to=215 evalue=NA)	iprscan	interpro DB: Coil	null	null	null	null
Radical SAM enzymes (db=superfamily db_id=SSF102114 from=8 to=313 evalue=2.7e-49)	iprscan	interpro DB: superfamily	null	null	null	2.70e-49
Radical_SAM (db=HMMPfam db_id=PF04055 from=14 to=162 evalue=3.3e-14 interpro_id=IPR007197 interpro_description=Radical SAM GO=Molecular Function: catalytic activity (GO:0003824), Molecular Function: iron-sulfur cluster binding (GO:0051536))	iprscan	interpro DB: HMMPfam	null	null	null	3.30e-14
no description (db=HMMSmart db_id=SM00729 from=9 to=210 evalue=0.0012 interpro_id=IPR006638 interpro_description=Elongator protein 3/MiaB/NifB)	iprscan	interpro DB: HMMSmart	null	null	null	1.20e-03
radical SAM domain protein alias=ACDUNK_40206.45571.10_26,ACDUNK_40206.45571.10G0026,ACD5_C00175G00026 id=89219 tax=ACD5 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i	similarity	UNIREF DB: UNIREF90	100.0	null	868	9.60e-250

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.