Alias: ACD15_13018.53448.16
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD15_39_31
uncultured bacterium, Bacteria
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Not on your lists |
28487..29350
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fructose-1,6-bisphosphate aldolase, class II
ALDOLASE_CLASS_II_1 (db=PatternScan db_id=PS00602 from=72 to=85 evalue=0.0 interpro_id=IPR000771 interpro_description=Ketose-bisphosphate aldolase, class-II GO=Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332), Biological Process: glycolysis (GO:0006096), Molecular Function: zinc ion binding (GO:0008270))
Fructose-bisphosphate aldolase II (db=HMMPIR db_id=PIRSF001359 from=1 to=287 evalue=5.3e-102 interpro_id=IPR000771 interpro_description=Ketose-bisphosphate aldolase, class-II GO=Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332), Biological Process: glycolysis (GO:0006096), Molecular Function: zinc ion binding (GO:0008270))
F_bP_aldolase (db=HMMPfam db_id=PF01116 from=2 to=287 evalue=5.1e-89 interpro_id=IPR000771 interpro_description=Ketose-bisphosphate aldolase, class-II GO=Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332), Biological Process: glycolysis (GO:0006096), Molecular Function: zinc ion binding (GO:0008270))
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ACD15_39_32
uncultured bacterium, Bacteria
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Not on your lists |
29380..29820
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NAD(P)-dependent iron-only hydrogenase diaphorase component iron-sulfur protein
Complex1_24kDa (db=HMMPfam db_id=PF01257 from=6 to=145 evalue=8.6e-30 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
Thioredoxin-like (db=superfamily db_id=SSF52833 from=12 to=146 evalue=9.6e-27 interpro_id=IPR012336 interpro_description=Thioredoxin-like fold)
NADH-UBIQUINONE OXIDOREDUCTASE 24 KDA SUBUNIT (db=HMMPanther db_id=PTHR10371 from=16 to=145 evalue=4.8e-23 interpro_id=IPR002023 interpro_description=NADH:ubiquinone oxidoreductase, 24kDa subunit GO=Molecular Function: oxidoreductase activity (GO:0016491), Molecular Function: NAD or NADH binding (GO:0051287), Biological Process: oxidation reduction (GO:0055114))
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ACD15_39_33
uncultured bacterium, Bacteria
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Not on your lists |
29828..31078
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NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH dehydrogenase (Quinone) n=5 Tax=Thermotogaceae RepID=A5IKJ3_THEP1 (db=UNIREF evalue=1.0e-92 bit_score=343.0 identity=46.59 coverage=97.6019184652278)
seg (db=Seg db_id=seg from=294 to=303)
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ACD15_39_34
uncultured bacterium, Bacteria
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Not on your lists |
31084..32493
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hydA1; electron bifurcating hydrogenase subunit HydA1 (EC:1.12.1.3)
Hydrogenase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J5D7_9BACL (db=UNIREF evalue=2.0e-55 bit_score=220.0 identity=28.54 coverage=95.9574468085106)
seg (db=Seg db_id=seg from=274 to=285)
seg (db=Seg db_id=seg from=456 to=463)
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no L2 and L3 active motifs- L1 is TSCNNTKA- only partial. remove from Fe hydrogenase list
kelly wrighton
(11/30/12)
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ACD15_39_35
uncultured bacterium, Bacteria
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Not on your lists |
32612..32941
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hydrogenase assembly chaperone HypC/HupF
HupF_HypC (db=HMMPfam db_id=PF01455 from=45 to=107 evalue=1.8e-21 interpro_id=IPR001109 interpro_description=Hydrogenase expression/formation protein, HupF/HypC)
hypC_hupF: hydrogenase assembly chaperone H (db=HMMTigr db_id=TIGR00074 from=45 to=95 evalue=3.0e-19 interpro_id=IPR001109 interpro_description=Hydrogenase expression/formation protein, HupF/HypC)
HUPFHYPC (db=FPrintScan db_id=PR00445 from=80 to=96 evalue=1.3e-05 interpro_id=IPR001109 interpro_description=Hydrogenase expression/formation protein, HupF/HypC)
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ACD15_39_36
uncultured bacterium, Bacteria
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Not on your lists |
33005..34036
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HypD; hydrogenase maturation factor
HypD; hydrogenase maturation factor
UPI0001D5AE2F related cluster n=1 Tax=unknown RepID=UPI0001D5AE2F (db=UNIREF evalue=1.0e-87 bit_score=327.0 identity=48.98 coverage=94.7674418604651)
[NiFe]-hydrogenase maturation factor, HypD type (db=HMMPIR db_id=PIRSF005622 from=1 to=343 evalue=2.4e-145 interpro_id=IPR002780 interpro_description=Hydrogenase formation HypD protein GO=Molecular Function: metal ion binding (GO:0046872))
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ACD15_39_37
uncultured bacterium, Bacteria
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Not on your lists |
34023..34427
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acetobutylicum phosphotransbutyrylase
seg (db=Seg db_id=seg from=76 to=90)
seg (db=Seg db_id=seg from=3 to=11)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=30)
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Phosphotransbutyrylase catalyzes the first reaction in the formation of n-butanoate from butanoyl-CoA during acidogenesis
Jill Banfield
(11/15/12)
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ACD15_39_38
uncultured bacterium, Bacteria
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Not on your lists |
34405..35418
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hydrogenase expression/formation protein hype
hypE: hydrogenase expression/formation prote (db=HMMTigr db_id=TIGR02124 from=6 to=337 evalue=1.3e-119 interpro_id=IPR011854 interpro_description=Hydrogenase expression/formation protein HypE)
[NiFe]-hydrogenase maturation factor, AIR synthase-related, HypE type (db=HMMPIR db_id=PIRSF005644 from=1 to=337 evalue=9.4e-116 interpro_id=IPR011854 interpro_description=Hydrogenase expression/formation protein HypE)
PurM N-terminal domain-like (db=superfamily db_id=SSF55326 from=1 to=164 evalue=1.7e-28 interpro_id=IPR016188 interpro_description=PurM, N-terminal-like GO=Molecular Function: catalytic activity (GO:0003824))
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ACD15_39_39
uncultured bacterium, Bacteria
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Not on your lists |
comp(35426..36661)
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hydrogenase expression regulatory protein HypF
seg (db=Seg db_id=seg from=94 to=108)
seg (db=Seg db_id=seg from=215 to=226)
(NiFe) hydrogenase maturation protein HypF; K04656 hydrogenase maturation protein HypF alias=ACD15_13018.53448.16G0039,ACD15_13018.53448.16_39,ACD15_C00039G00039 id=8739 tax=ACD15 species=Methanocaldococcus fervens genus=Methanocaldococcus taxon_order=Methanococcales taxon_class=Methanococci phylum=Euryarchaeota organism_group=OD1-i organism_desc=OD1-i
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ACD15_39_40
uncultured bacterium, Bacteria
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Not on your lists |
36764..37552
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hydrogenase subunit gamma
seg (db=Seg db_id=seg from=2 to=15)
HydA/Nqo6-like (db=superfamily db_id=SSF56770 from=12 to=232 evalue=8.3e-35)
Oxidored_q6 (db=HMMPfam db_id=PF01058 from=24 to=158 evalue=2.3e-21 interpro_id=IPR006137 interpro_description=NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO=Molecular Function: NADH dehydrogenase (ubiquinone) activity (GO:0008137), Molecular Function: quinone binding (GO:0048038), Molecular Function: 4 iron, 4 sulfur cluster binding (GO:0051539), Biological Process: oxidation reduction (GO:0055114))
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ACD15_39_41
uncultured bacterium, Bacteria
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Not on your lists |
37586..38845
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coenzyme F420-reducing hydrogenase subunit alpha
Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM (db=UNIREF evalue=8.0e-61 bit_score=238.0 identity=35.87 coverage=98.3333333333333)
seg (db=Seg db_id=seg from=336 to=350)
seg (db=Seg db_id=seg from=101 to=117)
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ACD15_39_42
uncultured bacterium, Bacteria
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Not on your lists |
38964..39338
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desulfoferrodoxin
Desulfoferrodoxin n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZS6_9CLOT (db=UNIREF evalue=2.0e-33 bit_score=144.0 identity=57.26 coverage=98.4)
seg (db=Seg db_id=seg from=100 to=111)
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ACD15_39_43
uncultured bacterium, Bacteria
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Not on your lists |
39366..39641
|
seg (db=Seg db_id=seg from=6 to=26)
HypA (db=HMMPfam db_id=PF01155 from=1 to=37 evalue=2.8e-06 interpro_id=IPR000688 interpro_description=Hydrogenase nickel incorporation protein HypA/HybF GO=Biological Process: protein modification process (GO:0006464), Molecular Function: nickel ion binding (GO:0016151))
Uncharacterized protein {ECO:0000313|EMBL:EKE11775.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD15_39_44
uncultured bacterium, Bacteria
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Not on your lists |
39674..40678
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glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
glyceraldehyde 3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde 3-phosphate dehydrogenase n=1 Tax=Clostridium tetani RepID=Q898R4_CLOTE (db=UNIREF evalue=5.0e-105 bit_score=384.0 identity=59.05 coverage=99.4029850746269)
seg (db=Seg db_id=seg from=194 to=204)
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ACD15_39_45
uncultured bacterium, Bacteria
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Not on your lists |
40724..42295
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N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
N-acyl-D-amino-acid deacylase (EC:3.5.1.81)
Amidohydrolase 3 n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2T5_NATTJ (db=UNIREF evalue=2.0e-96 bit_score=357.0 identity=37.36 coverage=99.4274809160305)
no description (db=Gene3D db_id=G3DSA:3.20.20.140 from=55 to=457 evalue=1.3e-74)
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ACD15_39_46
uncultured bacterium, Bacteria
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Not on your lists |
42306..43694
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UDP-N-acetylmuramoylalanine--D-glutamate ligase
seg (db=Seg db_id=seg from=15 to=24)
murD: UDP-N-acetylmuramoylalanine--D-glutama (db=HMMTigr db_id=TIGR01087 from=10 to=460 evalue=1.6e-120 interpro_id=IPR005762 interpro_description=UDP-N-acetylmuramoylalanine-D-glutamate ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase activity (GO:0008764), Biological Process: peptidoglycan biosynthetic process (GO:0009252), Biologi
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=119 to=461 evalue=2.6e-87)
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ACD15_39_47
uncultured bacterium, Bacteria
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Not on your lists |
43846..45234
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ABC-type antimicrobial peptide transport system, ATPase component
ABC_TRANSPORTER_1 (db=PatternScan db_id=PS00211 from=147 to=161 evalue=0.0 interpro_id=IPR017871 interpro_description=ABC transporter, conserved site GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: ATPase activity (GO:0016887))
ATP BINDING CASSETE (ABC) TRANSPORTER (db=HMMPanther db_id=PTHR19222 from=6 to=239 evalue=6.9e-90)
ABC TRANSPORTER (db=HMMPanther db_id=PTHR19222:SF32 from=6 to=239 evalue=6.9e-90)
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ACD15_39_48
uncultured bacterium, Bacteria
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Not on your lists |
45238..46440
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hypothetical protein
seg (db=Seg db_id=seg from=372 to=383)
seg (db=Seg db_id=seg from=321 to=337)
transmembrane_regions (db=TMHMM db_id=tmhmm from=262 to=284)
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ACD15_39_49
uncultured bacterium, Bacteria
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Not on your lists |
comp(47293..47955)
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seg (db=Seg db_id=seg from=37 to=45)
Uncharacterized protein {ECO:0000313|EMBL:EKE11781.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD15_39_50
uncultured bacterium, Bacteria
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Not on your lists |
comp(48093..48347)
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48093..48347 - (rbs_motif=None rbs_spacer=None)
Uncharacterized protein {ECO:0000313|EMBL:EKE11746.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD15_39_51
uncultured bacterium, Bacteria
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Not on your lists |
48647..49036
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=26)
Uncharacterized protein {ECO:0000313|EMBL:EKE11747.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD15_39_52
uncultured bacterium, Bacteria
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Not on your lists |
comp(49192..50004)
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49192..50004 - (rbs_motif=AAT rbs_spacer=5bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE11748.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD15_39_53
uncultured bacterium, Bacteria
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Not on your lists |
comp(50243..50629)
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seg (db=Seg db_id=seg from=107 to=128)
seg (db=Seg db_id=seg from=4 to=18)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
Uncharacterized protein {ECO:0000313|EMBL:EKE11749.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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ACD15_39_54
uncultured bacterium, Bacteria
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Not on your lists |
comp(50692..51384)
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seg (db=Seg db_id=seg from=209 to=223)
seg (db=Seg db_id=seg from=169 to=182)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
seg (db=Seg db_id=seg from=110 to=129)
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ACD15_39_55
uncultured bacterium, Bacteria
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Not on your lists |
51687..53438
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PAS domain S-box
Sensor protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D3Q1_9BACT (db=UNIREF evalue=3.0e-75 bit_score=286.0 identity=35.77 coverage=87.6712328767123)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=214 to=236)
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