| Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
|---|---|---|---|---|---|---|---|
| sigma-70 family RNA polymerase sigma factor | similarity |
KEGG
DB: KEGG |
50.8 | 417.0 | 372 | 1.40e-100 | amo:Anamo_0432 |
| seg (db=Seg db_id=seg from=151 to=162) | iprscan |
interpro
DB: Seg |
null | null | null | null | amo:Anamo_0432 |
| seg (db=Seg db_id=seg from=23 to=38) | iprscan |
interpro
DB: Seg |
null | null | null | null | amo:Anamo_0432 |
| coiled-coil (db=Coil db_id=coil from=162 to=183 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | amo:Anamo_0432 |
| coiled-coil (db=Coil db_id=coil from=371 to=392 evalue=NA) | iprscan |
interpro
DB: Coil |
null | null | null | null | amo:Anamo_0432 |
| seg (db=Seg db_id=seg from=3 to=15) | iprscan |
interpro
DB: Seg |
null | null | null | null | amo:Anamo_0432 |
| SIGMA70_2 (db=PatternScan db_id=PS00716 from=370 to=396 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | amo:Anamo_0432 |
| SIGMA70_1 (db=PatternScan db_id=PS00715 from=200 to=213 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: PatternScan |
null | null | null | 0.0 | amo:Anamo_0432 |
| Sigma2 domain of RNA polymerase sigma factors (db=superfamily db_id=SSF88946 from=133 to=246 evalue=1.2e-50 interpro_id=IPR013325 interpro_description=RNA polymerase sigma factor, region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 1.20e-50 | amo:Anamo_0432 |
| no description (db=Gene3D db_id=G3DSA:1.10.601.10 from=139 to=245 evalue=1.4e-48) | iprscan |
interpro
DB: Gene3D |
null | null | null | 1.40e-48 | amo:Anamo_0432 |
| sigma70-ECF: RNA polymerase sigma factor, (db=HMMTigr db_id=TIGR02937 from=171 to=400 evalue=5.4e-31 interpro_id=IPR014284 interpro_description=RNA polymerase sigma-70 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMTigr |
null | null | null | 5.40e-31 | amo:Anamo_0432 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=370 to=385 evalue=4.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 4.30e-30 | amo:Anamo_0432 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=349 to=361 evalue=4.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 4.30e-30 | amo:Anamo_0432 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=224 to=232 evalue=4.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 4.30e-30 | amo:Anamo_0432 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=200 to=213 evalue=4.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 4.30e-30 | amo:Anamo_0432 |
| SIGMA70FCT (db=FPrintScan db_id=PR00046 from=385 to=396 evalue=4.3e-30 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
null | null | null | 4.30e-30 | amo:Anamo_0432 |
| Sigma70_r2 (db=HMMPfam db_id=PF04542 from=176 to=246 evalue=3.2e-23 interpro_id=IPR007627 interpro_description=RNA polymerase sigma-70 region 2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.20e-23 | amo:Anamo_0432 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=331 to=408 evalue=5.1e-23 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 5.10e-23 | amo:Anamo_0432 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=307 to=400 evalue=8.3e-23 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 8.30e-23 | amo:Anamo_0432 |
| Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=249 to=324 evalue=3.6e-19 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: superfamily |
null | null | null | 3.60e-19 | amo:Anamo_0432 |
| Sigma70_r3 (db=HMMPfam db_id=PF04539 from=255 to=332 evalue=1.0e-18 interpro_id=IPR007624 interpro_description=RNA polymerase sigma-70 region 3 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 1.00e-18 | amo:Anamo_0432 |
| Sigma70_r4 (db=HMMPfam db_id=PF04545 from=345 to=397 evalue=2.4e-18 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 2.40e-18 | amo:Anamo_0432 |
| no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=249 to=300 evalue=7.8e-16 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
null | null | null | 7.80e-16 | amo:Anamo_0432 |
| Sigma70_r1_2 (db=HMMPfam db_id=PF00140 from=137 to=172 evalue=3.2e-14 interpro_id=IPR009042 interpro_description=RNA polymerase sigma-70 region 1.2 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
null | null | null | 3.20e-14 | amo:Anamo_0432 |
| RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor alias=ACD15_C00064G00004,ACD15_6832.28877.18G0004,ACD15_6832.28877.18_4 id=9153 tax=ACD15 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes organism_group=OD1-i organism_desc=OD1-i | similarity |
UNIREF
DB: UNIREF90 |
100.0 | null | 787 | 2.10e-225 | amo:Anamo_0432 |
| RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" |
UNIPROT
DB: UniProtKB |
100.0 | 408.0 | 787 | 7.00e-225 | K2EKS3_9BACT |
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