ggKbase | organisms

Consensus taxonomy: Gammaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: ALUMROCK_MS4_Gammaproteobacteria_54_60 Manually curated genome
Original version: ALUMROCK_MS4_Gammaproteobacteria_54_60

Properties

Avg. coverage: 1.00 Longest contig: 60.29 Kbp Bin length: 2.61 Mbp GC content: 54.23 %

Contigs count: 483 Features count: 3063 rRNAs count: 2 tRNAs count: 31

Genome completeness

near complete RP 50 / 55 MC: 4 BSCG 50 / 51 MC: 4 ASCG 12 / 38 MC: 1

Displaying items 1-50 of 483 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
ar4r2_scaffold_21481 Species: Sedimenticola sp. SIP-G1 (100%)	1	1776 bp	56.14	1.00	58.28
ar4r2_scaffold_32483 Species: endosymbiont of unidentified scaly snail isolate Monju (100%)	1	1010 bp	59.11	1.00	99.80
ar4r2_scaffold_31464 Species: Candidatus Contendobacter odensis (100%)	1	1232 bp	59.33	1.00	99.84
ar4r2_scaffold_27401 Species: CG_Hydro_01 (100%)	1	1162 bp	49.31	1.00	90.36
ar4r2_scaffold_22107 Species: BJP_IG2102_Gammaproteobacteria_62_140 (100%)	1	1739 bp	63.48	1.00	99.89
ar4r2_scaffold_28882 Species: Candidatus Contendobacter odensis (100%)	1	1765 bp	55.24	1.00	66.46
ar4r2_scaffold_29115 Species: endosymbiont of Riftia pachyptila (100%)	1	1891 bp	54.15	1.00	58.22
ar4r2_scaffold_32967 Species: endosymbiont of unidentified scaly snail isolate Monju (100%)	1	1248 bp	55.93	1.00	99.76
ar4r2_scaffold_25929 Species: Gammaproteobacteria bacterium BRH_c0 (100%)	1	2082 bp	60.52	1.00	100.00
ar4r2_scaffold_13857 Species: Thioalkalivibrio thiocyanoxidans (100%)	1	2522 bp	57.22	1.00	88.03
ar4r2_scaffold_26860 Species: CG_Proteo_01 (100%)	1	1466 bp	49.18	1.00	99.86
ar4r2_scaffold_28804 Species: endosymbiont of Riftia pachyptila (100%)	1	1785 bp	58.60	1.00	99.83
ar4r2_scaffold_10638 Species: BJP_IG2102_Gammaproteobacteria_62_140 (100%)	1	3215 bp	60.19	1.00	99.94
ar4r2_scaffold_22320 Species: Ectothiorhodospira sp. PHS-1 (50%)	2	2175 bp	56.60	1.00	76.83
ar4r2_scaffold_24499 Species: GWA2_Burkholderiales_64_37_curated (50%)	2	1639 bp	57.11	1.00	97.74
ar4r2_scaffold_11997 Species: Thiorhodococcus drewsii (50%)	2	2950 bp	59.29	1.00	91.83
ar4r2_scaffold_7837 Species: Halothiobacillus neapolitanus (100%)	2	3815 bp	55.05	1.00	94.99
ar4r2_scaffold_20905 Species: endosymbiont of Riftia pachyptila (50%)	2	1967 bp	57.96	1.00	71.68
ar4r2_scaffold_19031 Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)	2	2361 bp	59.68	1.00	88.95
ar4r2_scaffold_20302 Species: Halothiobacillus neapolitanus (50%)	2	1842 bp	53.15	1.00	98.70
ar4r2_scaffold_24894 Species: endosymbiont of Riftia pachyptila (50%)	2	1745 bp	59.31	1.00	100.06
ar4r2_scaffold_29853 Species: endosymbiont of Tevnia jerichonana (50%)	2	1752 bp	59.08	1.00	100.17
ar4r2_scaffold_28963 Species: Thiorhodococcus sp. AK35 (50%)	2	1486 bp	56.66	1.00	100.54
ar4r2_scaffold_19517 Species: Burkholderia pseudomallei (50%)	2	2011 bp	60.91	1.00	100.10
ar4r2_scaffold_27788 Species: Thiobacillus prosperus (50%)	2	1623 bp	52.99	1.00	93.35
ar4r2_scaffold_27072 Species: Halorhodospira halochloris (50%)	2	2221 bp	55.38	1.00	100.09
ar4r2_scaffold_27781 Species: Plasmodium yoelii (50%)	2	2494 bp	55.25	1.00	95.99
ar4r2_scaffold_20572 Species: Endozoicomonas elysicola (50%)	2	1732 bp	58.60	1.00	94.57
ar4r2_scaffold_20571 Species: Allochromatium vinosum (50%)	2	1600 bp	57.31	1.00	96.00
ar4r2_scaffold_20079 Species: BJP_IG2102_Gammaproteobacteria_62_140 (100%)	2	3371 bp	57.55	1.00	94.87
ar4r2_scaffold_20175 Species: Thioalkalivibrio sulfidiphilus (50%)	2	2002 bp	59.44	1.00	98.15
ar4r2_scaffold_22953 Species: Pseudomonas alcaligenes (50%)	2	2993 bp	55.90	1.00	84.00
ar4r2_scaffold_23391 Species: Halothiobacillus neapolitanus (50%)	2	3357 bp	56.90	1.00	82.13
ar4r2_scaffold_32214 Species: Thioalkalivibrio sulfidiphilus (50%)	2	1234 bp	56.56	1.00	98.46
ar4r2_scaffold_29741 Species: Alishewanella jeotgali (50%)	2	1979 bp	49.07	1.00	100.20
ar4r2_scaffold_11615 Species: CG_Hydro_01 (100%)	2	4268 bp	57.76	1.00	99.18
ar4r2_scaffold_18545 Species: Candidatus Contendobacter odensis (100%)	2	1685 bp	60.12	1.00	100.24
ar4r2_scaffold_32631 Species: Halorhodospira halochloris (50%)	2	2133 bp	54.06	1.00	99.30
ar4r2_scaffold_14235 Species: Allochromatium vinosum (50%)	2	2181 bp	61.03	1.00	74.69
ar4r2_scaffold_29488 Species: endosymbiont of unidentified scaly snail isolate Monju (50%)	2	1548 bp	60.72	1.00	99.22
ar4r2_scaffold_25848 Species: Halorhodospira halochloris (50%)	2	1322 bp	55.67	1.00	98.03
ar4r2_scaffold_36937 Species: Halothiobacillus neapolitanus (50%)	2	1945 bp	54.24	1.00	90.85
ar4r2_scaffold_12297 Species: GWB2_Nitrospirae_47_37_curated (50%)	2	2398 bp	57.67	1.00	100.08
ar4r2_scaffold_16627 Species: Sulfurospirillum barnesii (50%)	2	2126 bp	48.35	1.00	90.31
ar4r2_scaffold_35560 Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)	2	1987 bp	57.47	1.00	97.23
ar4r2_scaffold_34630 Species: Thiothrix nivea (50%)	2	1591 bp	50.03	1.00	78.44
ar4r2_scaffold_23674 Species: Candidatus Contendobacter odensis (50%)	2	1818 bp	58.20	1.00	99.01
ar4r2_scaffold_22377 Species: Halothiobacillus neapolitanus (50%)	2	2236 bp	56.62	1.00	99.42
ar4r2_scaffold_23867 Species: Thiocapsa marina (50%)	2	1485 bp	56.97	1.00	97.58
ar4r2_scaffold_18798 Species: Thioploca ingrica (50%)	2	2669 bp	61.82	1.00	99.70

Displaying items 1-50 of 483 in total

ALUMROCK_MS4_Gammaproteobacteria_54_60_curated

ALUMROCK_MS4_Gammaproteobacteria_54_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

ALUMROCK_MS4_Gammaproteobacteria_54_60_curated

ALUMROCK_MS4_Gammaproteobacteria_54_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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