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ALUMROCK_MS4_Gammaproteobacteria_57_14_Partial_curated

ALUMROCK_MS4_Gammaproteobacteria_57_1
In projects: ALUMROCK_MS4  |  alumrock-genomes

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: ALUMROCK_MS4_Gammaproteobacteria_57_14_Partial Manually curated genome
Original version: ALUMROCK_MS4_Gammaproteobacteria_57_14_Partial

Properties

Avg. coverage: 1.00 Longest contig: 25.02 Kbp Bin length: 2.05 Mbp GC content: 56.60 %
Contigs count: 387 Features count: 2280 rRNAs count: 1 tRNAs count: 14

Genome completeness

partial RP 41 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 13 / 38 MC: 2
Displaying items 151-200 of 387 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ar4r2_scaffold_8451
Species: Halothiobacillus neapolitanus (50%)
4 3259 bp 58.18 1.00 87.17
ar4r2_scaffold_9100
Class: Gammaproteobacteria (75%)
4 3053 bp 59.48 1.00 86.67
ar4r2_scaffold_7705
Order: Chromatiales (75%)
4 3498 bp 58.78 1.00 91.08
ar4r2_scaffold_7665
Species: Halothiobacillus neapolitanus (50%)
4 3850 bp 54.44 1.00 90.86
ar4r2_scaffold_7057
Class: Gammaproteobacteria (50%)
4 3841 bp 58.97 1.00 95.21
ar4r2_scaffold_7052
Order: Chromatiales (50%)
4 3995 bp 57.55 1.00 89.59
ar4r2_scaffold_9936
Species: Pseudomonas fulva (50%)
4 2815 bp 59.72 1.00 99.43
ar4r2_scaffold_7041
Species: Halothiobacillus neapolitanus (50%)
4 3811 bp 53.45 1.00 74.94
ar4r2_scaffold_6935
Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)
4 3921 bp 59.68 1.00 93.50
ar4r2_scaffold_6582
Species: Sulfuricella sp. T08 (50%)
4 4107 bp 59.65 1.00 94.23
ar4r2_scaffold_7848
Phylum: Proteobacteria (50%)
4 3514 bp 48.72 1.00 91.86
ar4r2_scaffold_8118
Class: Gammaproteobacteria (75%)
4 3264 bp 61.64 1.00 98.16
ar4r2_scaffold_6860
Species: Halothiobacillus neapolitanus (50%)
4 5660 bp 56.02 1.00 82.21
ar4r2_scaffold_9275
Class: Gammaproteobacteria (75%)
4 3000 bp 55.27 1.00 91.20
ar4r2_scaffold_8680
Class: Gammaproteobacteria (50%)
4 3178 bp 56.29 1.00 97.89
ar4r2_scaffold_12561
Species: Thiothrix nivea (75%)
4 2382 bp 54.28 1.00 73.30
ar4r2_scaffold_7946
Class: Gammaproteobacteria (50%)
4 3396 bp 59.42 1.00 95.58
ar4r2_scaffold_8878
Class: Gammaproteobacteria (80%)
5 3256 bp 56.54 1.00 99.51
ar4r2_scaffold_6176
Order: Chromatiales (80%)
5 4638 bp 55.35 1.00 90.36
ar4r2_scaffold_4727
Class: Gammaproteobacteria (60%)
5 5679 bp 55.56 1.00 86.85
ar4r2_scaffold_5007 5 5332 bp 52.93 1.00 98.86
ar4r2_scaffold_5529
Class: Gammaproteobacteria (60%)
5 5204 bp 59.20 1.00 88.43
ar4r2_scaffold_3977
Class: Gammaproteobacteria (80%)
5 6454 bp 60.09 1.00 100.22
ar4r2_scaffold_7850
Order: Burkholderiales (60%)
5 4047 bp 56.71 1.00 83.91
ar4r2_scaffold_8347
Class: Gammaproteobacteria (60%)
5 3294 bp 51.09 1.00 53.19
ar4r2_scaffold_3996
Domain: Bacteria (80%)
5 6328 bp 56.78 1.00 98.14
ar4r2_scaffold_9745
Class: Gammaproteobacteria (60%)
5 4479 bp 58.03 1.00 98.73
ar4r2_scaffold_7646
Class: Gammaproteobacteria (60%)
5 3569 bp 58.08 1.00 89.86
ar4r2_scaffold_8287
Phylum: Proteobacteria (80%)
5 3301 bp 61.38 1.00 97.79
ar4r2_scaffold_8283
Class: Gammaproteobacteria (60%)
5 3351 bp 54.19 1.00 90.33
ar4r2_scaffold_10236
Class: Gammaproteobacteria (80%)
5 3438 bp 50.00 1.00 65.71
ar4r2_scaffold_7346
Class: Gammaproteobacteria (60%)
5 3684 bp 61.67 1.00 90.64
ar4r2_scaffold_5750
Domain: Bacteria (60%)
5 4929 bp 57.72 1.00 89.71
ar4r2_scaffold_3378
Phylum: Proteobacteria (80%)
5 7562 bp 57.59 1.00 87.52
ar4r2_scaffold_8569
Class: Betaproteobacteria (60%)
5 3575 bp 52.73 1.00 68.31
ar4r2_scaffold_6840
Species: Halothiobacillus neapolitanus (60%)
5 3962 bp 53.53 1.00 99.87
ar4r2_scaffold_6534
Class: Gammaproteobacteria (80%)
5 3944 bp 58.19 1.00 94.47
ar4r2_scaffold_7983
Order: Chromatiales (60%)
5 3290 bp 57.69 1.00 99.76
ar4r2_scaffold_7153
Class: Gammaproteobacteria (80%)
5 3798 bp 58.53 1.00 86.65
ar4r2_scaffold_6228
Class: Gammaproteobacteria (80%)
5 4376 bp 56.31 1.00 81.58
ar4r2_scaffold_5922
Species: Halothiobacillus neapolitanus (60%)
5 4511 bp 54.64 1.00 88.45
ar4r2_scaffold_7018
Phylum: Proteobacteria (80%)
5 3883 bp 66.29 1.00 97.81
ar4r2_scaffold_7999
Species: Methylobacillus flagellatus (60%)
5 3426 bp 59.81 1.00 88.79
ar4r2_scaffold_4572
Order: Chromatiales (60%)
5 6919 bp 58.46 1.00 94.61
ar4r2_scaffold_3495
Class: Gammaproteobacteria (80%)
5 7367 bp 56.41 1.00 95.86
ar4r2_scaffold_7905
Class: Gammaproteobacteria (80%)
5 3919 bp 55.63 1.00 85.76
ar4r2_scaffold_10154
Class: Gammaproteobacteria (60%)
5 3426 bp 55.17 1.00 86.25
ar4r2_scaffold_3985
Order: Chromatiales (60%)
5 6518 bp 59.93 1.00 83.91
ar4r2_scaffold_6612
Genus: Acidithiobacillus (60%)
5 4054 bp 56.19 1.00 78.59
ar4r2_scaffold_5625
Phylum: Proteobacteria (80%)
5 4744 bp 57.46 1.00 81.89
Displaying items 151-200 of 387 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.