ggKbase home page

ar4r2_scaffold_16934_1

Organism: ALUMROCK_MS4_Thiotrichales-related_46_269_curated

near complete RP 47 / 55 MC: 3 BSCG 49 / 51 MC: 5 ASCG 11 / 38 MC: 2
Location: comp(1..1668)

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=870187 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 78.5
  • Coverage: 557.0
  • Bit_score: 883
  • Evalue 1.30e-253
Ribonuclease R n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BQJ9_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 78.5
  • Coverage: 557.0
  • Bit_score: 883
  • Evalue 9.10e-254
  • rbh
exoribonuclease R similarity KEGG
DB: KEGG
  • Identity: 62.6
  • Coverage: 554.0
  • Bit_score: 699
  • Evalue 6.90e-199

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Thiothrix nivea → Thiothrix → Thiotrichales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1668
TTGAAGTTTAAAGACCCCCATCACCAGCGCGAAGCTGAGAAGTACGATAACCCGATTCCCAGCCGCGAAGTCATTTTGCAATTACTGGGTGAACAAGGGCAACCGCTGGACTTTATGACACTGGCAAATGCTCTGCATCTCCATGAAGAGATGGATCTTGATGCCCTCAAAAAACGCTTACGGGCAATGGAGCGGGATGGGCAATTACTTTACAACCGCCGTCGTCAATACGTCCCTATTGCTCGTACCGATTTAATCGCAGGGCGCGTTATCGGACACGCCGACGGATTTGGCTTCCTGAAACCGGACGATGGCAGTGCCGATCTGTTTTTGCACGCTAAACAAATGCGCACTTTAATGCACGGCGACCGGGCGTTAGTCAGTGTACGCGGACTTGACCCCAAAGGGCGGCGCGAAGGTGCGTTGGTTGAAGTATTAGAACGTGGCACAATACAAGTGGTCGGGCGTTATTTTGTGGAAGGTGGCATTGGTTTTGTTGCACCCGACAACGCTCGCTTAAATCAAGATATTCTGATTCCCAGCGATGCTACCGGTGGTGCAGTGCATGGGCAGATTGTCGTTGCCAGCATTGTGGAACAGCCTTCCAAACGCGCTCAACCCAGCGGTAAAATTGTCGAAGTATTAGGTGATCACATGGCTCCAGGTATGGAGATCAATGTCGCGATGCGCAGTCATGAACTGCCTTTCGTGTGGCCTGATGAAGTCACTGAGGAAGCCGATCAGTTTAGTGTCAATGTCGCGGAAAGCGATGCAGCGAATCGTTGGGATTTACGCAAACTACCGTTAGTCACAATTGACGGCGAAGATTCCAAAGACTTTGATGATGCTGTTTATTGCGAACGTGAAGGCAATAACTGGCGTTTATTGGTGGCGATTGCTGACGTATCGCACTATGTGCGCCCCGGCATGGCAATTGATCGTGAAGCACGCGAACGCGGTACATCGGTATATTTCCCCGGCAAAGTCATTCCTATGTTGCCGGAAATTCTCTCCAACGGTTTATGCTCACTTAACCCGCAAGTCGACCGTTTGTGTATGGTATGTGAAATTCATATCGGCGCGCGCGGTAAGTTACTCAGCTATCAATTTGCGGAAGGCATTATGCATTCGGCAGCACGTTTGACGTACACCAAAGTTGCCGACATGGTGGTGCAACGTAACCCGGCTGCGCGGGCGGATTATTCAACGCCTGTGATTGAGTGTGTGGATGAATTATACGCTTTGTACAAAGTGTTACGTAAAGCGCGTGATAAACGTGGTGCGATTGATTTTGAAACGGCTGAAACGCGCATTGTGTTTGATGCAGATCGTAAAATCGAAGCGATTGTTCCCACAGAACGCAATGACGCTCACAAATTGATCGAAGAATGTATGATTCTCGCCAATGTGTGCGCCGCAAAATTCCTCAGCAAGCATAAAATCCCTGCTTTACACCGGGTGCATGATGGCCCGACTGTGGAAAAACTGGTGGATTTACGCCAATTCCTCGCAGGCGTTGGTTTGAACTTGGAAGGCGGTGACGAACCTGATCCAGCGGATTACGCGGAATTGATGGATGAATTGCACGACCGTCCCGACCGTCACATGATTCAAACCGTGTTACTGCGCTCCCTGTCGCAAGCGGTTTACAGCCCTGCGGCTACCGGG
PROTEIN sequence
Length: 556
LKFKDPHHQREAEKYDNPIPSREVILQLLGEQGQPLDFMTLANALHLHEEMDLDALKKRLRAMERDGQLLYNRRRQYVPIARTDLIAGRVIGHADGFGFLKPDDGSADLFLHAKQMRTLMHGDRALVSVRGLDPKGRREGALVEVLERGTIQVVGRYFVEGGIGFVAPDNARLNQDILIPSDATGGAVHGQIVVASIVEQPSKRAQPSGKIVEVLGDHMAPGMEINVAMRSHELPFVWPDEVTEEADQFSVNVAESDAANRWDLRKLPLVTIDGEDSKDFDDAVYCEREGNNWRLLVAIADVSHYVRPGMAIDREARERGTSVYFPGKVIPMLPEILSNGLCSLNPQVDRLCMVCEIHIGARGKLLSYQFAEGIMHSAARLTYTKVADMVVQRNPAARADYSTPVIECVDELYALYKVLRKARDKRGAIDFETAETRIVFDADRKIEAIVPTERNDAHKLIEECMILANVCAAKFLSKHKIPALHRVHDGPTVEKLVDLRQFLAGVGLNLEGGDEPDPADYAELMDELHDRPDRHMIQTVLLRSLSQAVYSPAATG