ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.85 Longest contig: 107.60 Kbp Bin length: 603.35 Mbp GC content: 62.45 %

Contigs count: 292093 Features count: 802705 rRNAs count: 39 tRNAs count: 5198

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 751-800 of 292093 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_2_scaffold_231102 Species: Rubrobacter radiotolerans (50%)	2	1132 bp	56.10	1.77	91.43
13_1_20cm_2_scaffold_230874	1	1133 bp	56.22	1.77	60.11
13_1_20cm_2_scaffold_231336 Species: RBG_16_Zixibacteria_40_9_curated (50%)	2	1132 bp	51.15	1.77	94.61
13_1_20cm_2_scaffold_145876	3	1415 bp	67.35	1.77	83.32
13_1_20cm_2_scaffold_145885 Species: Pyrinomonas methylaliphatogenes (100%)	2	1415 bp	57.31	1.77	94.35
13_1_20cm_2_scaffold_180251 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1278 bp	62.28	1.77	90.61
13_1_20cm_2_scaffold_231409 Species: Mesorhizobium alhagi (50%)	2	1132 bp	59.89	1.77	86.93
13_1_20cm_2_scaffold_145933 Species: R_Rokubacteria_73_56 (100%)	1	1415 bp	63.11	1.77	95.62
13_1_20cm_2_scaffold_231414	1	1132 bp	51.77	1.77	77.39
13_1_20cm_2_scaffold_230957 Species: RBG_16_RIF03_38_10_curated (50%)	2	1133 bp	50.57	1.77	89.76
13_1_20cm_2_scaffold_180275	1	1278 bp	53.60	1.77	33.10
13_1_20cm_2_scaffold_231432 Species: RBG_19FT_COMBO_Armatimonadetes_69_19_curated (100%)	1	1132 bp	64.22	1.77	99.91
13_1_20cm_2_scaffold_83728 Species: Schlesneria paludicola (50%)	2	1842 bp	52.82	1.77	87.95
13_1_20cm_2_scaffold_231445 Species: Sphingomonas sanxanigenens (100%)	2	1132 bp	65.64	1.77	100.71
13_1_20cm_2_scaffold_231219 Species: Acidobacterium capsulatum (100%)	1	1132 bp	55.92	1.77	76.33
13_1_20cm_2_scaffold_231229 Species: Streptomonospora alba (100%)	1	1132 bp	60.34	1.77	75.53
13_1_20cm_2_scaffold_231466 Species: Ktedonobacter racemifer (100%)	1	1132 bp	50.80	1.77	99.65
13_1_20cm_2_scaffold_231255 Species: uncultured Acidobacteria bacterium (50%)	2	1132 bp	56.18	1.77	91.43
13_1_20cm_2_scaffold_232185	1	1130 bp	46.90	1.78	98.23
13_1_20cm_2_scaffold_233110 Species: Actinokineospora spheciospongiae (100%)	1	1127 bp	65.66	1.78	69.74
13_1_20cm_2_scaffold_231960 Species: RBG_19FT_COMBO_Chloroflexi_62_14_curated (50%)	2	1130 bp	72.48	1.78	79.65
13_1_20cm_2_scaffold_231730 Species: RBG_16_RIF_WS3X_71_46_curated (100%)	1	1131 bp	67.02	1.78	100.00
13_1_20cm_2_scaffold_231962	2	1130 bp	53.36	1.78	108.85
13_1_20cm_2_scaffold_232889 Phylum: Gemmatimonadetes (66.67%)	3	1128 bp	66.49	1.78	96.28
13_1_20cm_2_scaffold_183583 Species: Candidatus Koribacter versatilis (50%)	2	1266 bp	54.82	1.78	88.63
13_1_20cm_2_scaffold_232671 Species: RBG_16_Planctomycetes_43_13_curated (100%)	1	1129 bp	59.96	1.78	99.91
13_1_20cm_2_scaffold_231989 Species: marine sediment metagenome (100%)	2	1130 bp	58.94	1.78	92.39
13_1_20cm_2_scaffold_233142 Species: RBG_19FT_COMBO_Deltaproteobacteria_43_11_curated (50%)	2	1127 bp	66.73	1.78	93.17
13_1_20cm_2_scaffold_231767 Species: uncultured bacterium (50%)	2	1131 bp	54.64	1.78	74.27
13_1_20cm_2_scaffold_232461 Species: RLO_RIF_CHLX_71_12 (50%)	2	1129 bp	68.20	1.78	85.03
13_1_20cm_2_scaffold_231541 Species: Pectobacterium betavasculorum (50%)	2	1131 bp	53.23	1.78	98.14
13_1_20cm_2_scaffold_231544 Species: Haliangium ochraceum (50%)	2	1131 bp	69.58	1.78	85.68
13_1_20cm_2_scaffold_231779 Species: Pedosphaera parvula (50%)	2	1131 bp	55.88	1.78	81.96
13_1_20cm_2_scaffold_233392	2	1127 bp	71.69	1.78	100.35
13_1_20cm_2_scaffold_232702 Domain: Bacteria (50%)	4	1128 bp	68.53	1.78	91.76
13_1_20cm_2_scaffold_146996 Species: Bradyrhizobium sp. LTSPM299 (100%)	2	1410 bp	62.55	1.78	90.43
13_1_20cm_2_scaffold_232937	3	1128 bp	62.68	1.78	91.22
13_1_20cm_2_scaffold_233169 Species: Sphingomonas sp. RIT328 (50%)	2	1127 bp	60.69	1.78	82.52
13_1_20cm_2_scaffold_232020 Species: Gemmatimonadetes bacterium KBS708 (100%)	1	1130 bp	73.10	1.78	99.82
13_1_20cm_2_scaffold_183638 Species: Pedosphaera parvula (100%)	1	1266 bp	54.11	1.78	100.00
13_1_20cm_2_scaffold_232484 Species: RBG_13_Deltaproteobacteria_52_11_curated (50%)	2	1129 bp	55.54	1.78	58.46
13_1_20cm_2_scaffold_182956 Species: RIFOXYB12_FULL_Lentisphaerae_65_16_curated (50%)	2	1268 bp	57.89	1.78	100.32
13_1_20cm_2_scaffold_232264 Species: RLO_Nitrospinae_45_22 (100%)	1	1130 bp	61.59	1.78	99.82
13_1_20cm_2_scaffold_233187 Species: Thermococcus paralvinellae (50%)	2	1127 bp	66.19	1.78	88.11
13_1_20cm_2_scaffold_231809 Species: Prochlorococcus sp. MIT 0701 (50%)	2	1131 bp	54.02	1.78	91.78
13_1_20cm_2_scaffold_233195	2	1127 bp	44.54	1.78	70.81
13_1_20cm_2_scaffold_233428 Species: Pyrinomonas methylaliphatogenes (50%)	2	1127 bp	53.06	1.78	79.33
13_1_20cm_2_scaffold_232971	1	1128 bp	70.39	1.78	100.00
13_1_20cm_2_scaffold_232519 Species: RBG_19FT_COMBO_Armatimonadetes_69_19_curated (50%)	2	1129 bp	72.01	1.78	93.27
13_1_20cm_2_scaffold_232985 Species: Gracilimonas tropica (100%)	1	1128 bp	63.48	1.78	98.94

Displaying items 751-800 of 292093 in total

13_1_20CM_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_20CM_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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