Value | Algorithm | Source | Identity | Coverage | Bit score | Evalue | Cross references |
---|---|---|---|---|---|---|---|
RNA polymerase sigma factor n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1E1B6_9GAMM | similarity |
UNIREF
DB: UNIREF90 |
26.0 | 0.0 | 102 | 1.00e+00 | sbe:RAAC3_TM7C01G0635 |
RNA polymerase sigma factor Tax=zPERA2_38_36 |
UNIPROT
DB: UniProtKB |
100.0 | 353.0 | 682 | 3.60e-193 | ggdbv1_1380101 | |
hypothetical protein | similarity |
KEGG
DB: KEGG |
37.3 | 359.0 | 222 | 1.60e-55 | sbe:RAAC3_TM7C01G0635 |
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=5 to=91 evalue=1.7e-15 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) | iprscan |
interpro
DB: Gene3D |
0.0 | 0.0 | 0 | 1.00e+00 | sbe:RAAC3_TM7C01G0635 |
(db=HMMPfam db_id=PF04545 from=21 to=72 evalue=2.4e-13 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 2.00e+00 | sbe:RAAC3_TM7C01G0635 |
(db=HMMPfam db_id=PF05066 from=220 to=289 evalue=2.0e-05 interpro_id=IPR007759 interpro_description=DNA-directed RNA polymerase delta subunit GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription, DNA-dependent (GO:0006351)) | iprscan |
interpro
DB: HMMPfam |
0.0 | 0.0 | 0 | 2.00e+00 | sbe:RAAC3_TM7C01G0635 |
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=5 to=91 evalue=7.8e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function | iprscan |
interpro
DB: superfamily |
0.0 | 0.0 | 0 | 7.00e+00 | sbe:RAAC3_TM7C01G0635 |
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=23 to=35 evalue=9.4e-13 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) | iprscan |
interpro
DB: FPrintScan |
0.0 | 0.0 | 0 | 9.00e+00 | sbe:RAAC3_TM7C01G0635 |