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gwa2_scaffold_525_87 Annotations

Value Algorithm Source Identity Coverage Bit score Evalue Cross references
RNA polymerase sigma factor n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1E1B6_9GAMM similarity UNIREF
DB: UNIREF90
26.0 0.0 102 1.00e+00 sbe:RAAC3_TM7C01G0635
RNA polymerase sigma factor Tax=zPERA2_38_36 UNIPROT
DB: UniProtKB
100.0 353.0 682 3.60e-193 ggdbv1_1380101
hypothetical protein similarity KEGG
DB: KEGG
37.3 359.0 222 1.60e-55 sbe:RAAC3_TM7C01G0635
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=5 to=91 evalue=1.7e-15 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding) iprscan interpro
DB: Gene3D
0.0 0.0 0 1.00e+00 sbe:RAAC3_TM7C01G0635
(db=HMMPfam db_id=PF04545 from=21 to=72 evalue=2.4e-13 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 2.00e+00 sbe:RAAC3_TM7C01G0635
(db=HMMPfam db_id=PF05066 from=220 to=289 evalue=2.0e-05 interpro_id=IPR007759 interpro_description=DNA-directed RNA polymerase delta subunit GO=Molecular Function: DNA binding (GO:0003677), Biological Process: transcription, DNA-dependent (GO:0006351)) iprscan interpro
DB: HMMPfam
0.0 0.0 0 2.00e+00 sbe:RAAC3_TM7C01G0635
Sigma3 and sigma4 domains of RNA polymerase sigma factors (db=superfamily db_id=SSF88659 from=5 to=91 evalue=7.8e-15 interpro_id=IPR013324 interpro_description=RNA polymerase sigma factor, region 3/4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function iprscan interpro
DB: superfamily
0.0 0.0 0 7.00e+00 sbe:RAAC3_TM7C01G0635
SIGMA70FCT (db=FPrintScan db_id=PR00046 from=23 to=35 evalue=9.4e-13 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700), Biological Process: transcription initiation, DNA-dependent (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987)) iprscan interpro
DB: FPrintScan
0.0 0.0 0 9.00e+00 sbe:RAAC3_TM7C01G0635