ggKbase home page

S12_scaffold_110_curated_11

Organism: S12_Firmicutes_42_19_curated

near complete RP 49 / 55 MC: 1 BSCG 50 / 51 ASCG 14 / 38
Location: 12087..12737

Top 3 Functional Annotations

Value Algorithm Source
RNA pseudouridine synthase {ECO:0000313|EMBL:EEF65764.1}; EC=5.4.99.- {ECO:0000313|EMBL:EEF65764.1};; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.7
  • Coverage: 220.0
  • Bit_score: 251
  • Evalue 5.60e-64
RNA pseudouridine synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YE32_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 57.7
  • Coverage: 220.0
  • Bit_score: 251
  • Evalue 4.00e-64
pseudouridine synthase similarity KEGG
DB: KEGG
  • Identity: 55.8
  • Coverage: 217.0
  • Bit_score: 246
  • Evalue 6.20e-63

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Holdemania filiformis → Holdemania → Erysipelotrichales → Erysipelotrichia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 651
ATGGTTCCGCTAGACGTTCTGTTTGAGGATAATCATATCCTGGTCGTGGTAAAGCCCGTGAACATTCCCGTTCAACAGGATGTATCCGAAGACATGGATATGTTAACCATCATCAAGGACTATCTGCGAGAAAAATACGACAAGCCGGGTAATATCTTTGTGGGTCTTGTTCATCGTTTGGATCGGCCGGTGGGTGGGGTGATGGTGTTTGCGAAAACATCCAAAGCCGCATCGCGGCTATCCGAGTCCGTACGATTGCGTCAGCTCGATAAAATCTATACACTGGTATGTATTGGCGATCCCAAAATAGGTAAATATTCGGATCGATTGCTCAAAGACGAGAAGACCAACATGGTTCGAATCGATCCCAAAGGCAAGGACAGCGAGCTGATCGTTCTGAGCAAGAAAATGCTCGGTGATTTGAGTTTGTGTACAGTAAAACTGATGACCGGAAGGTCACATCAGATCCGTGTGCAATTTGCTTCTCGTAAGACTCCGCTTTGGGGTGACCAGCGTTATCACTCATCCGCGAAACCGGGTCAGCAGATCGCTCTATGGGCAACCGAGTTAACTTTCCCGCATCCGATATCCAAAGAGTTGATAACATTCTCCTGTTATCCGCCGAATCAGTTTCCTTTCAATCAATTCTAA
PROTEIN sequence
Length: 217
MVPLDVLFEDNHILVVVKPVNIPVQQDVSEDMDMLTIIKDYLREKYDKPGNIFVGLVHRLDRPVGGVMVFAKTSKAASRLSESVRLRQLDKIYTLVCIGDPKIGKYSDRLLKDEKTNMVRIDPKGKDSELIVLSKKMLGDLSLCTVKLMTGRSHQIRVQFASRKTPLWGDQRYHSSAKPGQQIALWATELTFPHPISKELITFSCYPPNQFPFNQF*