ggKbase home page

S15_scaffold_585_curated_15

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(16749..17393)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) RepID=Q4K4Q5_PSEF5 similarity UNIREF
DB: UNIREF100
  • Identity: 86.0
  • Coverage: 214.0
  • Bit_score: 360
  • Evalue 1.00e-96
  • rbh
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 86.0
  • Coverage: 214.0
  • Bit_score: 360
  • Evalue 2.90e-97
  • rbh
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AAY94910.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.0
  • Coverage: 214.0
  • Bit_score: 360
  • Evalue 1.50e-96

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudomonas protegens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 645
GTGAATGGAACAACCGCCCCCCCTGGACTAATCTTTGGCTGCGTCAGTCGGCGCCTGTCGTTGCCCCTTGCCCCAGTTCCTGCCAGGAGAACCGCCATCTCGAGCCTCGACACCGATCAACTGCGACACCTGCTGGCCCAGTGTTCACTGGGCGACCGCCGGGCCTTCGAAACCCTCTATCGCAGTGTTGCGCCACGCCTGCACGGCGTCGCCCTGCGCTTCATGGGCCGCCGCGATCTGGCCGAAGAGGTGCTGCAGGAAAGCTTCGTGCGTATCTGGAACAACGCCGTGCGCTACCAGCCGCACTTGTCCGCGCCCCTGACCTGGATGGTCAACATCACCCGCAACCAGGCCATCGACCAGTTGCGCAAACACCGCGAACGGCCCCTGGGCGAACTCGAAGAACAACAGCTGGAGGATCAAAGCCCTTCAGCCCACGACCAGCTGGACAGCGCCCGCGCCGCCCGGGCCCTGAACCGCTGCCTGGAAAGCCTCGACGGCATGCAGCGTCAGTCCATTACCGTGGCCTACTTCCAGGGCCTGTCCTGCTCGGAGCTGGCCGAACACCTGGCCGCGCCCCTGGGCTCGGTCAAATCCTGGATTCGTCGGGGCATGGAACGCCTGCGCCGGTGCCTTGAATCATGA
PROTEIN sequence
Length: 215
VNGTTAPPGLIFGCVSRRLSLPLAPVPARRTAISSLDTDQLRHLLAQCSLGDRRAFETLYRSVAPRLHGVALRFMGRRDLAEEVLQESFVRIWNNAVRYQPHLSAPLTWMVNITRNQAIDQLRKHRERPLGELEEQQLEDQSPSAHDQLDSARAARALNRCLESLDGMQRQSITVAYFQGLSCSELAEHLAAPLGSVKSWIRRGMERLRRCLES*