ggKbase home page

S15_scaffold_239_curated_13

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: 16215..17441

Top 3 Functional Annotations

Value Algorithm Source
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1500686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. Os17.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 408.0
  • Bit_score: 825
  • Evalue 1.80e-236
RNA-splicing ligase RtcB n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R4Q3_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 99.3
  • Coverage: 408.0
  • Bit_score: 819
  • Evalue 1.20e-234
  • rbh
rtcB2; protein RtcB similarity KEGG
DB: KEGG
  • Identity: 99.3
  • Coverage: 408.0
  • Bit_score: 819
  • Evalue 3.40e-235
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Pseudomonas sp. Os17 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1227
ATGGAACACAAAACCTACCAACTGCTGGAAGTGGCCAACGGCAAGCCGATCAAGATGTGGACCCAGGGCGTGCCGGTGGAAAACGAAGCGCGCCAGCAATTGATGAACACCGCGAAGATGCCGTTCATCTTCAAGCACCTGGCCGTGATGCCCGACGTGCACCTGGGTAAAGGTTCGACCATCGGTAGCGTGATCCCCACCGTAGGCGCGATCATTCCGGCGGCGGTCGGGGTGGATATCGGTTGCGGAATGATCGCTGCCCGTACCTCGCTGACCGCCTCCGACCTGCCGGATAACCTGGCCGGGTTGCGTAGCGCCATCGAGGCCGCGGTGCCTCACGGTCGTACTTCGCCCCGTAGCGGTCGCGATAAGGGCGCCTGGGGTGATGTGCCGCAGCAGACCGATCAGGCCTGGGCTGCGCTGCACCCACGCTTCAAGGCGATCACCGATAAGTACCCGGCCCTGGCCAACAGCAACAACCGCCAGCACCTGGGAACCCTCGGCGGCGGTAACCACTTCATCGAGGTCTGCCTGGATGAAGCCAACCGGGTCTGGTTCATGCTCCACAGCGGTTCCCGTGGCGTCGGTAACGCCATCGGCAACCTGTTCATTCACTTGGCACAGGCCGATATGCGTCAACATATCGCCAACCTGCCGGACCGCGACCTGGCCTACTTCGAGGAAGGCAGCCAGCACTTCGACGATTACGTGGAAGCCGTGGCCTGGGCCCAGGATTTCGCCCGGCAGAACCGTGAGCTGATGATGCAACTGGTGATCCAGGCCACCCGCAAGGTGATCAGCAAGCCCTTCGAAGTGGCGCTGGAGGCAGTGAACTGTCACCACAACTACGTGCAGAAGGAGCGCCACTTTGGTGAAGAGGTGCTGGTGACCCGCAAGGGCGCGGTGTCGGCGAAGAAGGGCGAGCTGGGGATCATTCCGGGGTCGATGGGGGCCAAGAGCTTCATCGTTCGCGGGCTGGGTAACGAGGAGGCGTTCTGCTCCTGCAGCCACGGTGCCGGGCGTACCATGAGCCGCACCAAGGCCAAGAACACCTTCACCCTGGCCGACCAGATCCGCGCGACCGCCCATGTGGAGTGCCGTAAGGACGAAGCGGTGATCGACGAAATCCCGATGGCCTACAAGGACATCGACCAAGTGATGCACGCCCAGCGCGAGCTGGTGGAAGTGCTGCACACCCTGCGTCAGGTGGTGTGCGTTAAGGGGTAG
PROTEIN sequence
Length: 409
MEHKTYQLLEVANGKPIKMWTQGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGSTIGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLAGLRSAIEAAVPHGRTSPRSGRDKGAWGDVPQQTDQAWAALHPRFKAITDKYPALANSNNRQHLGTLGGGNHFIEVCLDEANRVWFMLHSGSRGVGNAIGNLFIHLAQADMRQHIANLPDRDLAYFEEGSQHFDDYVEAVAWAQDFARQNRELMMQLVIQATRKVISKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKGAVSAKKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKNTFTLADQIRATAHVECRKDEAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG*