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S15_scaffold_411_curated_29

Organism: S15_RifCSP_Pseudomonas_62_25_curated

near complete RP 51 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(26805..27470)

Top 3 Functional Annotations

Value Algorithm Source
Glycerol metabolism activator n=1 Tax=Pseudomonas protegens CHA0 RepID=R4R6Z0_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 221.0
  • Bit_score: 428
  • Evalue 3.20e-117
  • rbh
agmR2; glycerol metabolism activator similarity KEGG
DB: KEGG
  • Identity: 99.5
  • Coverage: 221.0
  • Bit_score: 428
  • Evalue 9.00e-118
  • rbh
Two-component transcriptional regulator PedR1 {ECO:0000313|EMBL:AAY91478.1}; TaxID=220664 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.1
  • Coverage: 221.0
  • Bit_score: 426
  • Evalue 1.30e-116

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Taxonomy

Pseudomonas protegens → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGTATAAAATTCTGATAGCCGACGATCACCCACTGTTTCGCGAAGCCATCCACAACGTCATCAGCGACGGATTTCCCGGCAGCGAGGTGATGGAAACCGCCGACCTGGACAGCGCCCTGGCCCTGACCCAGGAGCACGACGATCTGGACCTGATCCTGCTCGACCTGAACATGCCCGGCATGCACGGCCTCAACGGCCTGATTACCCTGCGCAACGAAGCGCCGACCATTCCGGTGGTGATCGTCTCCGCCGAGCAGGACAAGCAGATCGTGCTCCAGGCCATCACCTACGGCGCCGTCGGCTTCATCACCAAATCCTCGGCGCGCTCGCAGATGACCGACGCCATCGAACAGATCCTCAATGGCAACGTGTACCTGCCGCCGGACATCATCCGCACCCAGAAAAGCCAGCCGGGCCGACGCAACAGCGAGACCCCGAGCTTTCCCCCGGAACTGCTGCAAGCCCTGACCCGCAAACAGCTGCTGGTACTGGAGCGCATGACCAAGGGCGAGTCCAACAAACAGATCGCCTACACCCTGGACATTGCCGAAACCACAGTGAAGGCCCACGTCTCGGCGATTCTGCGCAAGCTCAACGTGCACAACCGGGTGCAAGCGATCCTCAGCGCCGGTGATATCGATTTCGGCGCCTACCTGCGCCGCTAA
PROTEIN sequence
Length: 222
MYKILIADDHPLFREAIHNVISDGFPGSEVMETADLDSALALTQEHDDLDLILLDLNMPGMHGLNGLITLRNEAPTIPVVIVSAEQDKQIVLQAITYGAVGFITKSSARSQMTDAIEQILNGNVYLPPDIIRTQKSQPGRRNSETPSFPPELLQALTRKQLLVLERMTKGESNKQIAYTLDIAETTVKAHVSAILRKLNVHNRVQAILSAGDIDFGAYLRR*